Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1939

Experiment: Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.0001 mg/ml
2,297,191	+				-0.4
2,297,310	-		Pf6N2E2_1938	0.13	-1.5
2,297,644	+		Pf6N2E2_1938	0.49	-0.1
2,297,644	+		Pf6N2E2_1938	0.49	-0.4
2,297,645	-		Pf6N2E2_1938	0.49	-0.5
2,297,648	-		Pf6N2E2_1938	0.49	-0.5
2,297,648	-		Pf6N2E2_1938	0.49	+0.3
2,297,794	-		Pf6N2E2_1938	0.65	-0.6
2,297,796	+		Pf6N2E2_1938	0.65	+0.4
2,297,796	+		Pf6N2E2_1938	0.65	-0.3
2,297,884	+		Pf6N2E2_1938	0.74	+0.0
2,297,884	+		Pf6N2E2_1938	0.74	+0.4
2,297,884	+		Pf6N2E2_1938	0.74	-0.9
2,297,884	+		Pf6N2E2_1938	0.74	-0.2
2,297,922	+		Pf6N2E2_1938	0.78	-0.0
2,298,028	+		Pf6N2E2_1938	0.90	+0.6
2,298,158	+				+0.4
2,298,159	-				+0.2
2,298,252	+				+0.3
2,298,253	-				-1.6
2,298,259	+				+0.8
2,298,259	+				-1.1
2,298,259	+				-0.3
2,298,273	+				+0.2
2,298,273	+				-0.7
2,298,273	+				+0.4
2,298,273	+				+0.6
2,298,273	+				-0.1
2,298,274	-				+0.2
2,298,274	-				+1.6
2,298,274	-				+0.2
2,298,274	-				-0.6
2,298,274	-				+0.4
2,298,342	-				-0.5
2,298,344	+				-0.1
2,298,345	-				-1.1
2,298,381	+				-1.3
2,298,382	-				+0.1
2,298,420	-				+0.6
2,298,420	-				-0.6
2,298,526	-		Pf6N2E2_1939	0.14	-2.7
2,298,807	+		Pf6N2E2_1939	0.26	+1.9
2,298,807	+		Pf6N2E2_1939	0.26	+0.7
2,298,808	-		Pf6N2E2_1939	0.26	+0.1
2,298,808	-		Pf6N2E2_1939	0.26	-0.3
2,299,040	+		Pf6N2E2_1939	0.35	+0.9
2,299,043	+		Pf6N2E2_1939	0.35	+0.4
2,299,043	+		Pf6N2E2_1939	0.35	-0.1
2,299,085	+		Pf6N2E2_1939	0.37	+0.5
2,299,086	-		Pf6N2E2_1939	0.37	-1.7
2,299,086	-		Pf6N2E2_1939	0.37	-0.0
2,299,139	+		Pf6N2E2_1939	0.39	-0.1
2,299,196	+		Pf6N2E2_1939	0.42	-0.4
2,299,197	-		Pf6N2E2_1939	0.42	+0.8
2,299,214	+		Pf6N2E2_1939	0.42	-0.7
2,299,215	-		Pf6N2E2_1939	0.42	+0.9
2,299,397	+		Pf6N2E2_1939	0.50	-0.0
2,299,397	+		Pf6N2E2_1939	0.50	+0.1
2,299,398	-		Pf6N2E2_1939	0.50	+1.1
2,299,400	+		Pf6N2E2_1939	0.50	+0.7
2,299,400	+		Pf6N2E2_1939	0.50	+1.0
2,299,401	-		Pf6N2E2_1939	0.50	+1.3
2,299,463	+		Pf6N2E2_1939	0.53	+1.3
2,299,464	-		Pf6N2E2_1939	0.53	+0.3
2,299,464	-		Pf6N2E2_1939	0.53	-0.1
2,299,464	-		Pf6N2E2_1939	0.53	-0.7
2,299,497	-		Pf6N2E2_1939	0.54	+1.4
2,299,518	-		Pf6N2E2_1939	0.55	+1.0
2,299,613	+		Pf6N2E2_1939	0.59	+1.0
2,299,614	-		Pf6N2E2_1939	0.59	+0.4
2,299,614	-		Pf6N2E2_1939	0.59	+0.2
2,299,780	+		Pf6N2E2_1939	0.66	+0.2
2,299,781	-		Pf6N2E2_1939	0.66	-0.1
2,299,781	-		Pf6N2E2_1939	0.66	-0.1
2,299,781	-		Pf6N2E2_1939	0.66	+1.0
2,300,152	+		Pf6N2E2_1939	0.81	+1.0
2,300,152	+		Pf6N2E2_1939	0.81	-0.7
2,300,153	-		Pf6N2E2_1939	0.81	+0.8
2,300,153	-		Pf6N2E2_1939	0.81	-0.1
2,300,391	+				+1.2
2,300,392	-				+0.0
2,300,392	-				-0.6
2,300,416	+				+0.4
2,300,416	+				+0.4
2,300,416	+				+0.3
2,300,417	-				+1.0
2,300,417	-				+0.5
2,300,417	-				-0.1
2,300,417	-				-2.7
2,300,417	-				+1.3
2,300,417	-				+0.6
2,300,417	-				-0.7
2,300,502	-				-0.6
2,300,644	-				+0.8
2,300,716	+				-0.1
2,300,716	+				-0.0
2,300,716	+				-0.4
2,300,717	-				-0.7
2,300,717	-				+0.4
2,300,717	-				-0.5
2,300,717	-				+0.9
2,300,717	-				+0.9
2,300,717	-				-0.7
2,300,717	-				-0.0
2,300,717	-				+0.4
2,300,719	-				-0.9
2,300,751	-				+0.9
2,300,768	-				+0.6
2,300,768	-				+0.7
2,300,798	+				-0.6
2,300,829	+				+1.3
2,300,830	-				+0.3
2,300,883	+				-0.6
2,300,884	-				+0.9
2,300,884	-				-0.5
2,300,937	+				-0.1
2,300,938	-				-0.1
2,300,938	-				+1.3
2,300,938	-				-0.9
2,300,960	+				+1.7
2,300,960	+				+0.4
2,300,961	-				+0.4
2,300,981	+				-0.8
2,300,982	-				+1.1
2,300,982	-				+0.3
2,301,127	+		Pf6N2E2_1940	0.13	-3.3
2,301,143	-				+1.4
2,301,177	+		Pf6N2E2_1940	0.16	-1.5
2,301,177	+		Pf6N2E2_1940	0.16	-0.6
2,301,401	+		Pf6N2E2_1940	0.32	+0.0
2,301,401	+		Pf6N2E2_1940	0.32	-0.0
2,301,402	-		Pf6N2E2_1940	0.32	-1.7
2,301,452	+		Pf6N2E2_1940	0.35	+0.3
2,301,452	+		Pf6N2E2_1940	0.35	-1.7
2,301,452	+		Pf6N2E2_1940	0.35	-0.1
2,301,453	-		Pf6N2E2_1940	0.35	+0.9