Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29535

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS29530 and PFLU_RS29535 are separated by 6 nucleotidesPFLU_RS29535 and PFLU_RS29540 overlap by 4 nucleotidesPFLU_RS29540 and PFLU_RS29545 are separated by 168 nucleotides PFLU_RS29530: PFLU_RS29530 - tonB-system energizer ExbB, at 6,554,133 to 6,555,101 _RS29530 PFLU_RS29535: PFLU_RS29535 - TonB system transport protein ExbD, at 6,555,108 to 6,555,533 _RS29535 PFLU_RS29540: PFLU_RS29540 - energy transducer TonB, at 6,555,530 to 6,556,279 _RS29540 PFLU_RS29545: PFLU_RS29545 - hydrogen peroxide-inducible genes activator, at 6,556,448 to 6,557,368 _RS29545 Position (kb) 6555 6556Strain fitness (log2 ratio) -2 -1 0 1 2at 6556.356 kb on + strandat 6556.356 kb on + strandat 6556.357 kb on - strandat 6556.357 kb on - strandat 6556.357 kb on - strandat 6556.357 kb on - strandat 6556.357 kb on - strandat 6556.375 kb on - strandat 6556.388 kb on + strandat 6556.400 kb on - strandat 6556.415 kb on + strandat 6556.416 kb on - strandat 6556.416 kb on - strandat 6556.447 kb on + strandat 6556.456 kb on + strandat 6556.456 kb on + strandat 6556.456 kb on + strandat 6556.457 kb on - strandat 6556.457 kb on - strandat 6556.457 kb on - strandat 6556.457 kb on - strandat 6556.457 kb on - strandat 6556.464 kb on + strandat 6556.464 kb on + strandat 6556.465 kb on - strandat 6556.465 kb on - strandat 6556.465 kb on - strandat 6556.465 kb on - strandat 6556.469 kb on + strandat 6556.469 kb on + strandat 6556.469 kb on + strandat 6556.469 kb on + strandat 6556.469 kb on + strandat 6556.469 kb on + strandat 6556.469 kb on + strandat 6556.469 kb on + strandat 6556.469 kb on + strandat 6556.470 kb on - strandat 6556.470 kb on - strandat 6556.470 kb on - strandat 6556.470 kb on - strandat 6556.470 kb on - strandat 6556.470 kb on - strandat 6556.470 kb on - strandat 6556.470 kb on - strandat 6556.470 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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6,556,356 + -0.4
6,556,356 + +0.4
6,556,357 - +0.1
6,556,357 - +0.3
6,556,357 - +1.0
6,556,357 - +1.1
6,556,357 - -0.3
6,556,375 - -1.0
6,556,388 + -0.8
6,556,400 - +1.4
6,556,415 + +0.5
6,556,416 - -0.4
6,556,416 - -1.7
6,556,447 + -1.1
6,556,456 + +0.2
6,556,456 + +0.6
6,556,456 + +1.1
6,556,457 - -0.5
6,556,457 - +1.6
6,556,457 - -0.3
6,556,457 - +2.3
6,556,457 - +2.3
6,556,464 + +1.5
6,556,464 + +1.3
6,556,465 - +0.1
6,556,465 - +1.1
6,556,465 - -2.3
6,556,465 - +0.9
6,556,469 + -1.5
6,556,469 + -0.3
6,556,469 + +1.0
6,556,469 + +1.0
6,556,469 + +0.6
6,556,469 + +0.6
6,556,469 + +2.0
6,556,469 + +1.3
6,556,469 + +0.7
6,556,470 - +1.3
6,556,470 - +0.4
6,556,470 - +0.4
6,556,470 - +0.0
6,556,470 - +2.2
6,556,470 - +0.3
6,556,470 - +0.5
6,556,470 - -0.2
6,556,470 - -0.9

Or see this region's nucleotide sequence