Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04365

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04350 and MMP_RS04355 are separated by 14 nucleotidesMMP_RS04355 and MMP_RS04360 are separated by 130 nucleotidesMMP_RS04360 and MMP_RS04365 are separated by 28 nucleotidesMMP_RS04365 and MMP_RS04370 are separated by 11 nucleotidesMMP_RS04370 and MMP_RS04375 are separated by 66 nucleotides MMP_RS04350: MMP_RS04350 - 2-hydroxyacyl-CoA dehydratase family protein, at 831,247 to 832,368 _RS04350 MMP_RS04355: MMP_RS04355 - ribonuclease H family protein, at 832,383 to 832,988 _RS04355 MMP_RS04360: MMP_RS04360 - hypothetical protein, at 833,119 to 833,310 _RS04360 MMP_RS04365: MMP_RS04365 - M48 family metallopeptidase, at 833,339 to 834,007 _RS04365 MMP_RS04370: MMP_RS04370 - hypothetical protein, at 834,019 to 834,489 _RS04370 MMP_RS04375: MMP_RS04375 - TetR/AcrR family transcriptional regulator, at 834,556 to 835,146 _RS04375 Position (kb) 833 834 835Strain fitness (log2 ratio) -3 -2 -1 0 1at 832.367 kb on + strandat 832.386 kb on - strandat 832.424 kb on - strandat 832.466 kb on - strand, within MMP_RS04355at 832.483 kb on - strand, within MMP_RS04355at 832.484 kb on + strand, within MMP_RS04355at 832.489 kb on + strand, within MMP_RS04355at 832.489 kb on + strand, within MMP_RS04355at 832.501 kb on + strand, within MMP_RS04355at 832.501 kb on + strand, within MMP_RS04355at 832.503 kb on + strand, within MMP_RS04355at 832.504 kb on - strand, within MMP_RS04355at 832.504 kb on - strand, within MMP_RS04355at 832.504 kb on - strand, within MMP_RS04355at 832.505 kb on + strand, within MMP_RS04355at 832.505 kb on + strand, within MMP_RS04355at 832.509 kb on - strand, within MMP_RS04355at 832.510 kb on + strand, within MMP_RS04355at 832.510 kb on + strand, within MMP_RS04355at 832.511 kb on - strand, within MMP_RS04355at 832.544 kb on - strand, within MMP_RS04355at 832.567 kb on - strand, within MMP_RS04355at 832.567 kb on - strand, within MMP_RS04355at 832.568 kb on + strand, within MMP_RS04355at 832.568 kb on + strand, within MMP_RS04355at 832.576 kb on - strand, within MMP_RS04355at 832.576 kb on - strand, within MMP_RS04355at 832.576 kb on - strand, within MMP_RS04355at 832.576 kb on - strand, within MMP_RS04355at 832.577 kb on + strand, within MMP_RS04355at 832.578 kb on - strand, within MMP_RS04355at 832.578 kb on - strand, within MMP_RS04355at 832.578 kb on - strand, within MMP_RS04355at 832.578 kb on - strand, within MMP_RS04355at 832.695 kb on + strand, within MMP_RS04355at 832.788 kb on - strand, within MMP_RS04355at 832.788 kb on - strand, within MMP_RS04355at 832.938 kb on + strandat 832.940 kb on - strandat 832.945 kb on + strandat 832.945 kb on + strandat 832.975 kb on - strandat 832.975 kb on - strandat 832.977 kb on - strandat 832.977 kb on - strandat 832.978 kb on + strandat 832.983 kb on + strandat 833.004 kb on - strandat 833.018 kb on - strandat 833.018 kb on - strandat 833.018 kb on - strandat 833.018 kb on - strandat 833.019 kb on + strandat 833.020 kb on - strandat 833.021 kb on + strandat 833.023 kb on + strandat 833.023 kb on + strandat 833.023 kb on + strandat 833.027 kb on + strandat 833.055 kb on + strandat 833.103 kb on + strandat 833.178 kb on + strand, within MMP_RS04360at 833.216 kb on - strand, within MMP_RS04360at 833.216 kb on - strand, within MMP_RS04360at 833.308 kb on - strandat 833.415 kb on - strand, within MMP_RS04365at 833.416 kb on + strand, within MMP_RS04365at 833.447 kb on - strand, within MMP_RS04365at 833.447 kb on - strand, within MMP_RS04365at 833.447 kb on - strand, within MMP_RS04365at 833.448 kb on + strand, within MMP_RS04365at 833.461 kb on - strand, within MMP_RS04365at 833.540 kb on - strand, within MMP_RS04365at 833.542 kb on - strand, within MMP_RS04365at 833.557 kb on + strand, within MMP_RS04365at 833.565 kb on + strand, within MMP_RS04365at 833.568 kb on - strand, within MMP_RS04365at 833.579 kb on - strand, within MMP_RS04365at 833.582 kb on + strand, within MMP_RS04365at 833.592 kb on - strand, within MMP_RS04365at 833.592 kb on - strand, within MMP_RS04365at 833.593 kb on + strand, within MMP_RS04365at 833.616 kb on - strand, within MMP_RS04365at 833.616 kb on - strand, within MMP_RS04365at 833.617 kb on + strand, within MMP_RS04365at 833.645 kb on - strand, within MMP_RS04365at 833.646 kb on + strand, within MMP_RS04365at 833.646 kb on + strand, within MMP_RS04365at 833.737 kb on - strand, within MMP_RS04365at 833.842 kb on + strand, within MMP_RS04365at 833.875 kb on - strand, within MMP_RS04365at 833.886 kb on - strand, within MMP_RS04365at 833.887 kb on + strand, within MMP_RS04365at 833.887 kb on + strand, within MMP_RS04365at 833.887 kb on + strand, within MMP_RS04365at 833.910 kb on - strand, within MMP_RS04365at 834.005 kb on - strandat 834.020 kb on - strandat 834.028 kb on - strandat 834.029 kb on + strandat 834.029 kb on + strandat 834.029 kb on + strandat 834.029 kb on + strandat 834.029 kb on + strandat 834.031 kb on + strandat 834.033 kb on - strandat 834.101 kb on - strand, within MMP_RS04370at 834.101 kb on - strand, within MMP_RS04370at 834.110 kb on + strand, within MMP_RS04370at 834.130 kb on - strand, within MMP_RS04370at 834.130 kb on - strand, within MMP_RS04370at 834.131 kb on + strand, within MMP_RS04370at 834.131 kb on + strand, within MMP_RS04370at 834.131 kb on + strand, within MMP_RS04370at 834.132 kb on - strand, within MMP_RS04370at 834.132 kb on - strand, within MMP_RS04370at 834.133 kb on + strand, within MMP_RS04370at 834.133 kb on + strand, within MMP_RS04370at 834.150 kb on - strand, within MMP_RS04370at 834.160 kb on - strand, within MMP_RS04370at 834.160 kb on - strand, within MMP_RS04370at 834.161 kb on + strand, within MMP_RS04370at 834.161 kb on + strand, within MMP_RS04370at 834.166 kb on + strand, within MMP_RS04370at 834.166 kb on + strand, within MMP_RS04370at 834.168 kb on + strand, within MMP_RS04370at 834.186 kb on - strand, within MMP_RS04370at 834.187 kb on + strand, within MMP_RS04370at 834.212 kb on - strand, within MMP_RS04370at 834.264 kb on - strand, within MMP_RS04370at 834.264 kb on - strand, within MMP_RS04370at 834.322 kb on - strand, within MMP_RS04370at 834.322 kb on - strand, within MMP_RS04370at 834.322 kb on - strand, within MMP_RS04370at 834.323 kb on + strand, within MMP_RS04370at 834.333 kb on - strand, within MMP_RS04370at 834.339 kb on - strand, within MMP_RS04370at 834.378 kb on - strand, within MMP_RS04370at 834.426 kb on - strand, within MMP_RS04370at 834.426 kb on - strand, within MMP_RS04370at 834.426 kb on - strand, within MMP_RS04370at 834.427 kb on + strand, within MMP_RS04370at 834.427 kb on + strand, within MMP_RS04370at 834.427 kb on + strand, within MMP_RS04370at 834.431 kb on + strand, within MMP_RS04370at 834.440 kb on - strand, within MMP_RS04370at 834.478 kb on - strandat 834.479 kb on + strandat 834.479 kb on + strandat 834.479 kb on + strandat 834.567 kb on - strandat 834.570 kb on - strandat 834.570 kb on - strandat 834.725 kb on + strand, within MMP_RS04375at 834.727 kb on - strand, within MMP_RS04375at 834.728 kb on + strand, within MMP_RS04375at 834.729 kb on - strand, within MMP_RS04375at 834.730 kb on + strand, within MMP_RS04375at 834.730 kb on + strand, within MMP_RS04375at 834.740 kb on + strand, within MMP_RS04375at 834.751 kb on - strand, within MMP_RS04375at 834.751 kb on - strand, within MMP_RS04375at 834.764 kb on - strand, within MMP_RS04375at 834.765 kb on + strand, within MMP_RS04375at 834.765 kb on + strand, within MMP_RS04375at 834.766 kb on - strand, within MMP_RS04375at 834.766 kb on - strand, within MMP_RS04375at 834.766 kb on - strand, within MMP_RS04375at 834.766 kb on - strand, within MMP_RS04375at 834.766 kb on - strand, within MMP_RS04375at 834.766 kb on - strand, within MMP_RS04375at 834.766 kb on - strand, within MMP_RS04375at 834.766 kb on - strand, within MMP_RS04375at 834.767 kb on + strand, within MMP_RS04375at 834.767 kb on + strand, within MMP_RS04375at 834.767 kb on + strand, within MMP_RS04375at 834.767 kb on + strand, within MMP_RS04375at 834.767 kb on + strand, within MMP_RS04375at 834.767 kb on + strand, within MMP_RS04375at 834.768 kb on - strandat 834.768 kb on - strand, within MMP_RS04375at 834.768 kb on - strand, within MMP_RS04375at 834.768 kb on - strand, within MMP_RS04375at 834.768 kb on - strand, within MMP_RS04375at 834.769 kb on + strand, within MMP_RS04375at 834.769 kb on + strand, within MMP_RS04375at 834.769 kb on + strand, within MMP_RS04375at 834.774 kb on - strand, within MMP_RS04375at 834.778 kb on - strand, within MMP_RS04375at 834.787 kb on - strand, within MMP_RS04375at 834.830 kb on - strand, within MMP_RS04375at 834.830 kb on - strand, within MMP_RS04375at 834.830 kb on - strand, within MMP_RS04375at 834.830 kb on - strand, within MMP_RS04375at 834.857 kb on - strand, within MMP_RS04375at 834.869 kb on - strand, within MMP_RS04375at 834.870 kb on + strand, within MMP_RS04375at 834.870 kb on + strand, within MMP_RS04375at 834.895 kb on + strand, within MMP_RS04375at 834.928 kb on - strand, within MMP_RS04375at 834.929 kb on + strand, within MMP_RS04375at 834.949 kb on - strand, within MMP_RS04375at 834.949 kb on - strand, within MMP_RS04375at 834.949 kb on - strand, within MMP_RS04375at 835.000 kb on - strand, within MMP_RS04375at 835.001 kb on + strand, within MMP_RS04375

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE
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832,367 + +0.2
832,386 - +0.6
832,424 - +0.0
832,466 - MMP_RS04355 0.14 -0.1
832,483 - MMP_RS04355 0.17 +0.6
832,484 + MMP_RS04355 0.17 +0.5
832,489 + MMP_RS04355 0.17 +0.0
832,489 + MMP_RS04355 0.17 -0.2
832,501 + MMP_RS04355 0.19 -0.3
832,501 + MMP_RS04355 0.19 -0.2
832,503 + MMP_RS04355 0.20 -0.0
832,504 - MMP_RS04355 0.20 -0.4
832,504 - MMP_RS04355 0.20 +0.1
832,504 - MMP_RS04355 0.20 -0.4
832,505 + MMP_RS04355 0.20 +0.1
832,505 + MMP_RS04355 0.20 +0.2
832,509 - MMP_RS04355 0.21 +0.1
832,510 + MMP_RS04355 0.21 +0.5
832,510 + MMP_RS04355 0.21 +0.2
832,511 - MMP_RS04355 0.21 +0.5
832,544 - MMP_RS04355 0.27 -0.1
832,567 - MMP_RS04355 0.30 -0.0
832,567 - MMP_RS04355 0.30 +0.4
832,568 + MMP_RS04355 0.31 +0.6
832,568 + MMP_RS04355 0.31 -0.2
832,576 - MMP_RS04355 0.32 +0.1
832,576 - MMP_RS04355 0.32 -0.7
832,576 - MMP_RS04355 0.32 +0.3
832,576 - MMP_RS04355 0.32 -0.2
832,577 + MMP_RS04355 0.32 -0.4
832,578 - MMP_RS04355 0.32 +0.8
832,578 - MMP_RS04355 0.32 -0.3
832,578 - MMP_RS04355 0.32 -0.3
832,578 - MMP_RS04355 0.32 -0.1
832,695 + MMP_RS04355 0.51 -0.0
832,788 - MMP_RS04355 0.67 +0.2
832,788 - MMP_RS04355 0.67 -0.1
832,938 + -0.1
832,940 - +0.2
832,945 + +0.3
832,945 + +0.4
832,975 - -0.1
832,975 - -0.3
832,977 - +0.8
832,977 - +0.1
832,978 + -0.0
832,983 + -0.4
833,004 - +0.0
833,018 - +0.1
833,018 - -0.1
833,018 - +0.3
833,018 - +0.4
833,019 + +0.2
833,020 - -0.3
833,021 + +0.5
833,023 + +0.6
833,023 + -0.4
833,023 + +0.1
833,027 + +0.6
833,055 + +0.4
833,103 + +0.2
833,178 + MMP_RS04360 0.31 -0.0
833,216 - MMP_RS04360 0.51 -0.1
833,216 - MMP_RS04360 0.51 -0.4
833,308 - +0.6
833,415 - MMP_RS04365 0.11 -0.5
833,416 + MMP_RS04365 0.12 +0.2
833,447 - MMP_RS04365 0.16 +0.0
833,447 - MMP_RS04365 0.16 +0.2
833,447 - MMP_RS04365 0.16 +0.4
833,448 + MMP_RS04365 0.16 +0.6
833,461 - MMP_RS04365 0.18 +0.5
833,540 - MMP_RS04365 0.30 +0.6
833,542 - MMP_RS04365 0.30 +0.6
833,557 + MMP_RS04365 0.33 -0.0
833,565 + MMP_RS04365 0.34 +0.2
833,568 - MMP_RS04365 0.34 +0.2
833,579 - MMP_RS04365 0.36 +0.1
833,582 + MMP_RS04365 0.36 +0.3
833,592 - MMP_RS04365 0.38 +0.1
833,592 - MMP_RS04365 0.38 +0.2
833,593 + MMP_RS04365 0.38 +0.2
833,616 - MMP_RS04365 0.41 +0.0
833,616 - MMP_RS04365 0.41 +0.6
833,617 + MMP_RS04365 0.42 -0.5
833,645 - MMP_RS04365 0.46 +0.1
833,646 + MMP_RS04365 0.46 +0.1
833,646 + MMP_RS04365 0.46 +0.3
833,737 - MMP_RS04365 0.59 -0.1
833,842 + MMP_RS04365 0.75 +0.0
833,875 - MMP_RS04365 0.80 +0.3
833,886 - MMP_RS04365 0.82 +0.3
833,887 + MMP_RS04365 0.82 +0.5
833,887 + MMP_RS04365 0.82 +0.2
833,887 + MMP_RS04365 0.82 +0.1
833,910 - MMP_RS04365 0.85 -0.1
834,005 - -0.1
834,020 - +0.2
834,028 - -1.0
834,029 + -0.1
834,029 + +0.1
834,029 + +0.2
834,029 + +0.4
834,029 + -0.1
834,031 + +0.2
834,033 - -0.6
834,101 - MMP_RS04370 0.17 +0.3
834,101 - MMP_RS04370 0.17 +0.3
834,110 + MMP_RS04370 0.19 -0.1
834,130 - MMP_RS04370 0.24 -0.3
834,130 - MMP_RS04370 0.24 +0.4
834,131 + MMP_RS04370 0.24 +0.0
834,131 + MMP_RS04370 0.24 -0.0
834,131 + MMP_RS04370 0.24 -0.0
834,132 - MMP_RS04370 0.24 +0.4
834,132 - MMP_RS04370 0.24 -0.1
834,133 + MMP_RS04370 0.24 -0.4
834,133 + MMP_RS04370 0.24 +0.4
834,150 - MMP_RS04370 0.28 +0.2
834,160 - MMP_RS04370 0.30 -0.6
834,160 - MMP_RS04370 0.30 -0.2
834,161 + MMP_RS04370 0.30 +0.1
834,161 + MMP_RS04370 0.30 +0.1
834,166 + MMP_RS04370 0.31 -0.2
834,166 + MMP_RS04370 0.31 +0.2
834,168 + MMP_RS04370 0.32 -0.1
834,186 - MMP_RS04370 0.35 +0.2
834,187 + MMP_RS04370 0.36 +0.1
834,212 - MMP_RS04370 0.41 +0.5
834,264 - MMP_RS04370 0.52 -0.2
834,264 - MMP_RS04370 0.52 -0.5
834,322 - MMP_RS04370 0.64 -0.0
834,322 - MMP_RS04370 0.64 -0.9
834,322 - MMP_RS04370 0.64 +0.5
834,323 + MMP_RS04370 0.65 +0.1
834,333 - MMP_RS04370 0.67 +0.1
834,339 - MMP_RS04370 0.68 -0.3
834,378 - MMP_RS04370 0.76 +0.6
834,426 - MMP_RS04370 0.86 +0.3
834,426 - MMP_RS04370 0.86 -0.2
834,426 - MMP_RS04370 0.86 -0.4
834,427 + MMP_RS04370 0.87 +0.1
834,427 + MMP_RS04370 0.87 -0.5
834,427 + MMP_RS04370 0.87 +0.2
834,431 + MMP_RS04370 0.87 -0.1
834,440 - MMP_RS04370 0.89 +0.4
834,478 - +0.5
834,479 + -0.6
834,479 + +0.5
834,479 + +0.3
834,567 - -0.6
834,570 - -0.3
834,570 - -0.4
834,725 + MMP_RS04375 0.29 +0.1
834,727 - MMP_RS04375 0.29 +0.0
834,728 + MMP_RS04375 0.29 -0.6
834,729 - MMP_RS04375 0.29 +0.1
834,730 + MMP_RS04375 0.29 -3.0
834,730 + MMP_RS04375 0.29 +0.0
834,740 + MMP_RS04375 0.31 +0.0
834,751 - MMP_RS04375 0.33 -0.4
834,751 - MMP_RS04375 0.33 +0.3
834,764 - MMP_RS04375 0.35 +0.2
834,765 + MMP_RS04375 0.35 -0.2
834,765 + MMP_RS04375 0.35 -0.8
834,766 - MMP_RS04375 0.36 -0.6
834,766 - MMP_RS04375 0.36 -0.6
834,766 - MMP_RS04375 0.36 -0.1
834,766 - MMP_RS04375 0.36 -0.1
834,766 - MMP_RS04375 0.36 -0.3
834,766 - MMP_RS04375 0.36 -0.3
834,766 - MMP_RS04375 0.36 -0.0
834,766 - MMP_RS04375 0.36 -0.1
834,767 + MMP_RS04375 0.36 -0.5
834,767 + MMP_RS04375 0.36 +0.0
834,767 + MMP_RS04375 0.36 +0.1
834,767 + MMP_RS04375 0.36 +0.1
834,767 + MMP_RS04375 0.36 +0.2
834,767 + MMP_RS04375 0.36 -0.1
834,768 - +1.1
834,768 - MMP_RS04375 0.36 -0.1
834,768 - MMP_RS04375 0.36 +0.4
834,768 - MMP_RS04375 0.36 -0.1
834,768 - MMP_RS04375 0.36 +0.2
834,769 + MMP_RS04375 0.36 +0.4
834,769 + MMP_RS04375 0.36 -0.3
834,769 + MMP_RS04375 0.36 +0.5
834,774 - MMP_RS04375 0.37 +0.1
834,778 - MMP_RS04375 0.38 +0.4
834,787 - MMP_RS04375 0.39 -0.1
834,830 - MMP_RS04375 0.46 -0.1
834,830 - MMP_RS04375 0.46 -0.1
834,830 - MMP_RS04375 0.46 +0.1
834,830 - MMP_RS04375 0.46 +0.5
834,857 - MMP_RS04375 0.51 +0.3
834,869 - MMP_RS04375 0.53 +0.0
834,870 + MMP_RS04375 0.53 +0.2
834,870 + MMP_RS04375 0.53 -0.0
834,895 + MMP_RS04375 0.57 +0.4
834,928 - MMP_RS04375 0.63 -0.3
834,929 + MMP_RS04375 0.63 -0.1
834,949 - MMP_RS04375 0.66 -0.1
834,949 - MMP_RS04375 0.66 +0.3
834,949 - MMP_RS04375 0.66 +0.2
835,000 - MMP_RS04375 0.75 +0.2
835,001 + MMP_RS04375 0.75 +0.3

Or see this region's nucleotide sequence