Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06810

Experiment: formate McAA pantothenate dropout

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate McAA pantothenate dropout
1,256,858	+				-0.4
1,256,867	-				+0.0
1,257,003	+		MMJJ_RS06800	0.34	+0.1
1,257,018	-		MMJJ_RS06800	0.37	+0.4
1,257,019	+		MMJJ_RS06800	0.37	+0.2
1,257,024	-		MMJJ_RS06800	0.39	+1.6
1,257,024	-		MMJJ_RS06800	0.39	+0.0
1,257,025	+		MMJJ_RS06800	0.39	+0.3
1,257,025	+		MMJJ_RS06800	0.39	+1.5
1,257,025	+		MMJJ_RS06800	0.39	+0.7
1,257,033	-		MMJJ_RS06800	0.41	-0.2
1,257,033	-		MMJJ_RS06800	0.41	-0.3
1,257,034	+		MMJJ_RS06800	0.41	+0.9
1,257,034	+		MMJJ_RS06800	0.41	+0.1
1,257,049	+		MMJJ_RS06800	0.44	-1.3
1,257,049	+		MMJJ_RS06800	0.44	+0.5
1,257,200	-		MMJJ_RS06800	0.79	+1.7
1,257,201	+		MMJJ_RS06800	0.79	+1.5
1,257,201	+		MMJJ_RS06800	0.79	+1.0
1,257,201	+		MMJJ_RS06800	0.79	-0.9
1,257,303	-				+0.5
1,257,304	+				+0.3
1,257,304	+				-1.1
1,257,306	-				+0.0
1,257,306	-				+0.8
1,257,307	+				+1.0
1,257,307	+				-0.0
1,257,327	+				-0.2
1,257,336	-				+0.9
1,257,337	+				+0.5
1,257,337	+				+1.1
1,257,349	-				+1.0
1,257,375	-				-0.1
1,257,376	+				+0.4
1,257,376	+				-0.1
1,257,383	-				+0.3
1,257,384	+				+1.1
1,257,390	-				+1.3
1,257,420	-				-2.0
1,257,420	-				-0.8
1,257,420	-				-0.5
1,257,421	+				-0.0
1,257,421	+				-1.1
1,257,421	+				-1.3
1,257,421	+				-1.3
1,257,422	-				-1.9
1,257,422	-				-0.9
1,257,422	-				-0.3
1,257,422	-				-2.7
1,257,422	-				-0.3
1,257,422	-				-0.4
1,257,422	-				+0.1
1,257,422	-				-2.5
1,257,422	-				-0.2
1,257,422	-				-0.7
1,257,422	-				-3.2
1,257,423	+				-1.7
1,257,423	+				-0.1
1,257,423	+				-3.1
1,257,423	+				+1.2
1,257,423	+				-0.4
1,257,423	+				-1.2
1,257,423	+				-1.6
1,257,425	+				-2.0
1,257,425	+				-3.0
1,257,425	+				-2.0
1,257,425	+				-0.5
1,257,425	+				-2.7
1,257,425	+				-2.1
1,257,427	+				-2.1
1,257,427	+				-1.0
1,257,430	-				-2.8
1,257,483	+				-2.9
1,257,555	-		MMJJ_RS06805	0.23	-2.8
1,257,556	+		MMJJ_RS06805	0.23	-2.4
1,257,556	+		MMJJ_RS06805	0.23	-1.3
1,257,615	-		MMJJ_RS06805	0.43	-2.1
1,257,724	+		MMJJ_RS06805	0.79	-2.3
1,257,747	-		MMJJ_RS06805	0.86	-2.3
1,257,764	-				-1.1
1,257,764	-				-0.3
1,257,768	-				-0.4
1,257,769	+				+0.5
1,257,785	-				+0.0
1,257,808	+				+0.3
1,257,841	-				+2.3
1,257,859	-				+0.0
1,257,859	-				+0.3
1,257,860	+				+0.1
1,257,860	+				-0.7
1,257,945	-				+1.4
1,257,945	-				+1.4
1,257,946	+				-0.1
1,257,950	+				+0.9
1,257,952	-				+0.3
1,257,953	+				+0.4
1,257,953	+				+0.0
1,257,988	-		MMJJ_RS06810	0.12	+1.3
1,257,989	+		MMJJ_RS06810	0.12	+0.7
1,257,993	-		MMJJ_RS06810	0.13	+0.3
1,258,017	-		MMJJ_RS06810	0.15	+0.5
1,258,018	+		MMJJ_RS06810	0.15	+1.1
1,258,020	+		MMJJ_RS06810	0.15	-1.3
1,258,039	-		MMJJ_RS06810	0.16	-0.4
1,258,056	-		MMJJ_RS06810	0.18	+0.9
1,258,056	-		MMJJ_RS06810	0.18	+1.4
1,258,093	-		MMJJ_RS06810	0.21	+0.1
1,258,127	-		MMJJ_RS06810	0.24	-0.2
1,258,176	-		MMJJ_RS06810	0.28	+1.0
1,258,177	+		MMJJ_RS06810	0.28	+0.7
1,258,180	-		MMJJ_RS06810	0.28	+0.1
1,258,180	-		MMJJ_RS06810	0.28	-0.6
1,258,203	-		MMJJ_RS06810	0.30	+0.2
1,258,211	+		MMJJ_RS06810	0.31	+0.2
1,258,217	+		MMJJ_RS06810	0.31	+1.0
1,258,260	-		MMJJ_RS06810	0.35	+0.5
1,258,270	+		MMJJ_RS06810	0.36	+0.0
1,258,295	+		MMJJ_RS06810	0.38	+0.0
1,258,309	+		MMJJ_RS06810	0.39	-2.0
1,258,359	-		MMJJ_RS06810	0.43	+0.7
1,258,360	+		MMJJ_RS06810	0.43	-1.3
1,258,364	-		MMJJ_RS06810	0.44	+0.7
1,258,364	-		MMJJ_RS06810	0.44	+0.5
1,258,364	-		MMJJ_RS06810	0.44	+0.2
1,258,365	+		MMJJ_RS06810	0.44	+1.0
1,258,365	+		MMJJ_RS06810	0.44	-0.1
1,258,365	+		MMJJ_RS06810	0.44	+0.0
1,258,416	+		MMJJ_RS06810	0.48	+0.6
1,258,416	+		MMJJ_RS06810	0.48	+0.6
1,258,417	-		MMJJ_RS06810	0.48	+0.3
1,258,418	+		MMJJ_RS06810	0.48	+0.9
1,258,424	+		MMJJ_RS06810	0.49	-1.8
1,258,432	+		MMJJ_RS06810	0.49	+0.9
1,258,454	-		MMJJ_RS06810	0.51	+0.3
1,258,486	-		MMJJ_RS06810	0.54	-0.2
1,258,486	-		MMJJ_RS06810	0.54	+0.8
1,258,486	-		MMJJ_RS06810	0.54	+0.3
1,258,487	+		MMJJ_RS06810	0.54	+2.1
1,258,528	-		MMJJ_RS06810	0.57	-0.6
1,258,529	+		MMJJ_RS06810	0.58	+0.1
1,258,529	+		MMJJ_RS06810	0.58	-0.2
1,258,559	+		MMJJ_RS06810	0.60	+0.7
1,258,559	+		MMJJ_RS06810	0.60	-0.1
1,258,559	+		MMJJ_RS06810	0.60	+1.0
1,258,587	-		MMJJ_RS06810	0.62	+2.6
1,258,596	+		MMJJ_RS06810	0.63	+0.0
1,258,630	+		MMJJ_RS06810	0.66	+1.3
1,258,667	-		MMJJ_RS06810	0.69	+0.6
1,258,678	-		MMJJ_RS06810	0.70	+0.2
1,258,678	-		MMJJ_RS06810	0.70	-0.4
1,258,679	+		MMJJ_RS06810	0.70	+1.1
1,258,679	+		MMJJ_RS06810	0.70	+1.4
1,258,679	+		MMJJ_RS06810	0.70	-0.8
1,258,679	+		MMJJ_RS06810	0.70	+2.0
1,258,688	-		MMJJ_RS06810	0.71	+0.1
1,258,718	+		MMJJ_RS06810	0.73	+1.3
1,258,718	+		MMJJ_RS06810	0.73	-1.5
1,258,718	+		MMJJ_RS06810	0.73	-0.7
1,258,737	-		MMJJ_RS06810	0.75	+0.5
1,258,824	-		MMJJ_RS06810	0.82	+1.5
1,258,825	+		MMJJ_RS06810	0.82	-0.6
1,258,828	+		MMJJ_RS06810	0.83	+1.7
1,258,828	+		MMJJ_RS06810	0.83	+0.6
1,258,828	+		MMJJ_RS06810	0.83	+0.7
1,258,857	-		MMJJ_RS06810	0.85	-0.1
1,258,909	+		MMJJ_RS06810	0.89	+0.7
1,258,909	+		MMJJ_RS06810	0.89	+0.8
1,258,933	-				-1.0
1,258,960	-				+2.0
1,258,980	-				+1.7
1,258,981	+				+0.0
1,258,981	+				+0.8
1,258,981	+				+0.4
1,259,008	+				+1.1
1,259,283	+		MMJJ_RS06815	0.59	-3.5
1,259,426	-				-1.0
1,259,491	-				-0.8
1,259,492	+				-0.2
1,259,583	-		MMJJ_RS06820	0.19	-0.8
1,259,584	+		MMJJ_RS06820	0.19	-0.3
1,259,593	-		MMJJ_RS06820	0.20	-1.8
1,259,594	+		MMJJ_RS06820	0.20	-0.8
1,259,712	-		MMJJ_RS06820	0.39	-0.3
1,259,741	+		MMJJ_RS06820	0.43	-0.6
1,259,764	+		MMJJ_RS06820	0.47	-1.2
1,259,822	+		MMJJ_RS06820	0.56	-0.8