Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02895

Experiment: formate McAA pantothenate dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02885 and MMJJ_RS02890 are separated by 9 nucleotidesMMJJ_RS02890 and MMJJ_RS02895 overlap by 4 nucleotidesMMJJ_RS02895 and MMJJ_RS02900 are separated by 156 nucleotidesMMJJ_RS02900 and MMJJ_RS02905 are separated by 33 nucleotidesMMJJ_RS02905 and MMJJ_RS02910 are separated by 132 nucleotides MMJJ_RS02885: MMJJ_RS02885 - NifB/NifX family molybdenum-iron cluster-binding protein, at 543,502 to 543,861 _RS02885 MMJJ_RS02890: MMJJ_RS02890 - ATP-binding protein, at 543,871 to 544,728 _RS02890 MMJJ_RS02895: MMJJ_RS02895 - ATP-binding protein, at 544,725 to 545,570 _RS02895 MMJJ_RS02900: MMJJ_RS02900 - hypothetical protein, at 545,727 to 546,011 _RS02900 MMJJ_RS02905: MMJJ_RS02905 - NifB/NifX family molybdenum-iron cluster-binding protein, at 546,045 to 546,404 _RS02905 MMJJ_RS02910: MMJJ_RS02910 - NifB/NifX family molybdenum-iron cluster-binding protein, at 546,537 to 546,938 _RS02910 Position (kb) 544 545 546Strain fitness (log2 ratio) -2 -1 0 1at 543.750 kb on - strand, within MMJJ_RS02885at 543.753 kb on - strand, within MMJJ_RS02885at 543.760 kb on - strand, within MMJJ_RS02885at 543.855 kb on - strandat 543.855 kb on - strandat 543.855 kb on - strandat 543.856 kb on + strandat 543.856 kb on + strandat 543.856 kb on + strandat 543.920 kb on - strandat 544.077 kb on + strand, within MMJJ_RS02890at 544.080 kb on - strand, within MMJJ_RS02890at 544.101 kb on - strand, within MMJJ_RS02890at 544.106 kb on - strand, within MMJJ_RS02890at 544.107 kb on + strand, within MMJJ_RS02890at 544.107 kb on + strand, within MMJJ_RS02890at 544.111 kb on + strand, within MMJJ_RS02890at 544.111 kb on + strand, within MMJJ_RS02890at 544.122 kb on - strand, within MMJJ_RS02890at 544.241 kb on - strand, within MMJJ_RS02890at 544.300 kb on + strand, within MMJJ_RS02890at 544.300 kb on + strand, within MMJJ_RS02890at 544.357 kb on + strand, within MMJJ_RS02890at 544.364 kb on - strand, within MMJJ_RS02890at 544.365 kb on + strand, within MMJJ_RS02890at 544.368 kb on - strand, within MMJJ_RS02890at 544.369 kb on + strand, within MMJJ_RS02890at 544.371 kb on + strand, within MMJJ_RS02890at 544.398 kb on - strand, within MMJJ_RS02890at 544.398 kb on - strand, within MMJJ_RS02890at 544.398 kb on - strand, within MMJJ_RS02890at 544.399 kb on + strand, within MMJJ_RS02890at 544.399 kb on + strand, within MMJJ_RS02890at 544.399 kb on + strand, within MMJJ_RS02890at 544.403 kb on - strand, within MMJJ_RS02890at 544.404 kb on + strand, within MMJJ_RS02890at 544.429 kb on - strand, within MMJJ_RS02890at 544.502 kb on + strand, within MMJJ_RS02890at 544.502 kb on + strand, within MMJJ_RS02890at 544.505 kb on - strand, within MMJJ_RS02890at 544.510 kb on + strand, within MMJJ_RS02890at 544.533 kb on - strand, within MMJJ_RS02890at 544.534 kb on + strand, within MMJJ_RS02890at 544.620 kb on - strand, within MMJJ_RS02890at 544.620 kb on - strand, within MMJJ_RS02890at 544.621 kb on + strand, within MMJJ_RS02890at 544.630 kb on + strand, within MMJJ_RS02890at 544.692 kb on - strandat 544.722 kb on + strandat 544.725 kb on + strandat 544.745 kb on + strandat 544.805 kb on - strandat 544.846 kb on - strand, within MMJJ_RS02895at 544.853 kb on + strand, within MMJJ_RS02895at 544.853 kb on + strand, within MMJJ_RS02895at 544.881 kb on + strand, within MMJJ_RS02895at 544.887 kb on - strand, within MMJJ_RS02895at 544.888 kb on + strand, within MMJJ_RS02895at 544.890 kb on + strand, within MMJJ_RS02895at 544.890 kb on + strand, within MMJJ_RS02895at 544.931 kb on - strand, within MMJJ_RS02895at 544.932 kb on + strand, within MMJJ_RS02895at 544.956 kb on + strand, within MMJJ_RS02895at 544.988 kb on + strand, within MMJJ_RS02895at 545.107 kb on - strand, within MMJJ_RS02895at 545.156 kb on + strand, within MMJJ_RS02895at 545.207 kb on + strand, within MMJJ_RS02895at 545.227 kb on - strand, within MMJJ_RS02895at 545.227 kb on - strand, within MMJJ_RS02895at 545.239 kb on - strand, within MMJJ_RS02895at 545.240 kb on + strand, within MMJJ_RS02895at 545.252 kb on - strand, within MMJJ_RS02895at 545.273 kb on + strand, within MMJJ_RS02895at 545.291 kb on - strand, within MMJJ_RS02895at 545.291 kb on - strand, within MMJJ_RS02895at 545.291 kb on - strand, within MMJJ_RS02895at 545.292 kb on + strand, within MMJJ_RS02895at 545.356 kb on + strand, within MMJJ_RS02895at 545.357 kb on - strand, within MMJJ_RS02895at 545.358 kb on + strand, within MMJJ_RS02895at 545.358 kb on + strand, within MMJJ_RS02895at 545.359 kb on - strandat 545.359 kb on - strand, within MMJJ_RS02895at 545.359 kb on - strand, within MMJJ_RS02895at 545.359 kb on - strand, within MMJJ_RS02895at 545.359 kb on - strand, within MMJJ_RS02895at 545.360 kb on + strand, within MMJJ_RS02895at 545.363 kb on + strand, within MMJJ_RS02895at 545.370 kb on + strand, within MMJJ_RS02895at 545.381 kb on - strand, within MMJJ_RS02895at 545.438 kb on + strand, within MMJJ_RS02895at 545.460 kb on + strand, within MMJJ_RS02895at 545.462 kb on - strand, within MMJJ_RS02895at 545.468 kb on + strand, within MMJJ_RS02895at 545.471 kb on - strand, within MMJJ_RS02895at 545.472 kb on + strand, within MMJJ_RS02895at 545.472 kb on + strand, within MMJJ_RS02895at 545.501 kb on + strandat 545.531 kb on - strandat 545.568 kb on - strandat 545.588 kb on - strandat 545.640 kb on + strandat 545.641 kb on - strandat 545.644 kb on + strandat 545.691 kb on - strandat 545.697 kb on + strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.702 kb on - strandat 545.703 kb on + strandat 545.703 kb on + strandat 545.703 kb on + strandat 545.735 kb on - strandat 545.735 kb on - strandat 545.735 kb on - strandat 545.735 kb on - strandat 545.736 kb on + strandat 545.775 kb on + strand, within MMJJ_RS02900at 545.785 kb on + strand, within MMJJ_RS02900at 545.801 kb on - strand, within MMJJ_RS02900at 545.801 kb on - strand, within MMJJ_RS02900at 545.802 kb on + strand, within MMJJ_RS02900at 545.813 kb on - strand, within MMJJ_RS02900at 545.824 kb on - strand, within MMJJ_RS02900at 545.825 kb on + strand, within MMJJ_RS02900at 545.846 kb on - strand, within MMJJ_RS02900at 545.853 kb on + strand, within MMJJ_RS02900at 545.867 kb on - strand, within MMJJ_RS02900at 545.874 kb on + strand, within MMJJ_RS02900at 545.874 kb on + strand, within MMJJ_RS02900at 545.875 kb on - strand, within MMJJ_RS02900at 545.875 kb on - strand, within MMJJ_RS02900at 545.876 kb on + strand, within MMJJ_RS02900at 545.876 kb on + strand, within MMJJ_RS02900at 545.876 kb on + strand, within MMJJ_RS02900at 545.876 kb on + strand, within MMJJ_RS02900at 545.876 kb on + strand, within MMJJ_RS02900at 546.023 kb on + strandat 546.064 kb on - strandat 546.233 kb on - strand, within MMJJ_RS02905at 546.328 kb on - strand, within MMJJ_RS02905at 546.328 kb on - strand, within MMJJ_RS02905at 546.329 kb on + strand, within MMJJ_RS02905at 546.329 kb on + strand, within MMJJ_RS02905at 546.344 kb on + strand, within MMJJ_RS02905at 546.352 kb on - strand, within MMJJ_RS02905at 546.439 kb on + strandat 546.443 kb on + strandat 546.447 kb on - strandat 546.449 kb on - strandat 546.450 kb on + strandat 546.450 kb on + strandat 546.451 kb on - strandat 546.451 kb on - strandat 546.478 kb on - strandat 546.513 kb on - strandat 546.552 kb on - strandat 546.552 kb on - strandat 546.552 kb on - strandat 546.553 kb on + strandat 546.553 kb on + strandat 546.553 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA pantothenate dropout
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543,750 - MMJJ_RS02885 0.69 -0.5
543,753 - MMJJ_RS02885 0.70 -0.4
543,760 - MMJJ_RS02885 0.72 +0.3
543,855 - +0.0
543,855 - -0.8
543,855 - +0.9
543,856 + +0.7
543,856 + +1.3
543,856 + +0.3
543,920 - -0.7
544,077 + MMJJ_RS02890 0.24 -0.1
544,080 - MMJJ_RS02890 0.24 +0.1
544,101 - MMJJ_RS02890 0.27 -1.1
544,106 - MMJJ_RS02890 0.27 -0.3
544,107 + MMJJ_RS02890 0.28 +0.7
544,107 + MMJJ_RS02890 0.28 +0.9
544,111 + MMJJ_RS02890 0.28 +0.1
544,111 + MMJJ_RS02890 0.28 +0.1
544,122 - MMJJ_RS02890 0.29 +0.4
544,241 - MMJJ_RS02890 0.43 +0.3
544,300 + MMJJ_RS02890 0.50 -0.8
544,300 + MMJJ_RS02890 0.50 +0.4
544,357 + MMJJ_RS02890 0.57 +0.1
544,364 - MMJJ_RS02890 0.57 +0.4
544,365 + MMJJ_RS02890 0.58 -2.2
544,368 - MMJJ_RS02890 0.58 -0.3
544,369 + MMJJ_RS02890 0.58 +0.2
544,371 + MMJJ_RS02890 0.58 +0.3
544,398 - MMJJ_RS02890 0.61 -0.7
544,398 - MMJJ_RS02890 0.61 +0.0
544,398 - MMJJ_RS02890 0.61 +0.2
544,399 + MMJJ_RS02890 0.62 +0.3
544,399 + MMJJ_RS02890 0.62 -0.6
544,399 + MMJJ_RS02890 0.62 +0.2
544,403 - MMJJ_RS02890 0.62 -0.5
544,404 + MMJJ_RS02890 0.62 -0.0
544,429 - MMJJ_RS02890 0.65 -0.3
544,502 + MMJJ_RS02890 0.74 -1.9
544,502 + MMJJ_RS02890 0.74 +0.4
544,505 - MMJJ_RS02890 0.74 -0.4
544,510 + MMJJ_RS02890 0.74 -1.0
544,533 - MMJJ_RS02890 0.77 +0.0
544,534 + MMJJ_RS02890 0.77 -0.5
544,620 - MMJJ_RS02890 0.87 -0.2
544,620 - MMJJ_RS02890 0.87 +0.6
544,621 + MMJJ_RS02890 0.87 +0.2
544,630 + MMJJ_RS02890 0.88 -0.4
544,692 - -0.4
544,722 + +0.8
544,725 + -0.3
544,745 + -0.8
544,805 - +0.2
544,846 - MMJJ_RS02895 0.14 +1.0
544,853 + MMJJ_RS02895 0.15 +1.3
544,853 + MMJJ_RS02895 0.15 +0.1
544,881 + MMJJ_RS02895 0.18 -0.4
544,887 - MMJJ_RS02895 0.19 +0.4
544,888 + MMJJ_RS02895 0.19 -0.3
544,890 + MMJJ_RS02895 0.20 +0.3
544,890 + MMJJ_RS02895 0.20 +0.2
544,931 - MMJJ_RS02895 0.24 +0.3
544,932 + MMJJ_RS02895 0.24 +1.1
544,956 + MMJJ_RS02895 0.27 +0.1
544,988 + MMJJ_RS02895 0.31 +0.8
545,107 - MMJJ_RS02895 0.45 -0.2
545,156 + MMJJ_RS02895 0.51 +0.4
545,207 + MMJJ_RS02895 0.57 +0.7
545,227 - MMJJ_RS02895 0.59 +0.4
545,227 - MMJJ_RS02895 0.59 +1.2
545,239 - MMJJ_RS02895 0.61 -1.0
545,240 + MMJJ_RS02895 0.61 +0.6
545,252 - MMJJ_RS02895 0.62 +0.6
545,273 + MMJJ_RS02895 0.65 +1.2
545,291 - MMJJ_RS02895 0.67 +0.2
545,291 - MMJJ_RS02895 0.67 -0.9
545,291 - MMJJ_RS02895 0.67 -0.4
545,292 + MMJJ_RS02895 0.67 +0.1
545,356 + MMJJ_RS02895 0.75 -1.8
545,357 - MMJJ_RS02895 0.75 +0.1
545,358 + MMJJ_RS02895 0.75 +0.8
545,358 + MMJJ_RS02895 0.75 -0.7
545,359 - +0.2
545,359 - MMJJ_RS02895 0.75 +0.3
545,359 - MMJJ_RS02895 0.75 +0.3
545,359 - MMJJ_RS02895 0.75 -0.6
545,359 - MMJJ_RS02895 0.75 -0.7
545,360 + MMJJ_RS02895 0.75 +0.7
545,363 + MMJJ_RS02895 0.75 -0.3
545,370 + MMJJ_RS02895 0.76 +0.2
545,381 - MMJJ_RS02895 0.78 +1.5
545,438 + MMJJ_RS02895 0.84 +0.1
545,460 + MMJJ_RS02895 0.87 +0.4
545,462 - MMJJ_RS02895 0.87 +0.5
545,468 + MMJJ_RS02895 0.88 +0.8
545,471 - MMJJ_RS02895 0.88 +0.5
545,472 + MMJJ_RS02895 0.88 +0.1
545,472 + MMJJ_RS02895 0.88 -0.9
545,501 + +0.2
545,531 - -0.6
545,568 - -1.2
545,588 - +0.5
545,640 + -0.3
545,641 - +0.8
545,644 + -0.8
545,691 - +0.9
545,697 + -2.5
545,702 - -0.2
545,702 - -0.4
545,702 - -0.3
545,702 - -0.7
545,702 - +0.8
545,702 - +0.0
545,703 + -0.3
545,703 + -0.6
545,703 + -0.1
545,735 - +0.1
545,735 - +0.4
545,735 - +0.2
545,735 - +0.5
545,736 + +0.5
545,775 + MMJJ_RS02900 0.17 -0.5
545,785 + MMJJ_RS02900 0.20 -0.3
545,801 - MMJJ_RS02900 0.26 -0.1
545,801 - MMJJ_RS02900 0.26 +1.3
545,802 + MMJJ_RS02900 0.26 -0.1
545,813 - MMJJ_RS02900 0.30 -1.0
545,824 - MMJJ_RS02900 0.34 -0.3
545,825 + MMJJ_RS02900 0.34 +0.7
545,846 - MMJJ_RS02900 0.42 +0.1
545,853 + MMJJ_RS02900 0.44 -0.8
545,867 - MMJJ_RS02900 0.49 +0.7
545,874 + MMJJ_RS02900 0.52 -0.3
545,874 + MMJJ_RS02900 0.52 -0.4
545,875 - MMJJ_RS02900 0.52 -0.8
545,875 - MMJJ_RS02900 0.52 +0.2
545,876 + MMJJ_RS02900 0.52 +0.8
545,876 + MMJJ_RS02900 0.52 +0.3
545,876 + MMJJ_RS02900 0.52 +0.2
545,876 + MMJJ_RS02900 0.52 +0.7
545,876 + MMJJ_RS02900 0.52 -0.5
546,023 + -0.3
546,064 - +0.2
546,233 - MMJJ_RS02905 0.52 -2.0
546,328 - MMJJ_RS02905 0.79 +0.4
546,328 - MMJJ_RS02905 0.79 -0.4
546,329 + MMJJ_RS02905 0.79 -0.7
546,329 + MMJJ_RS02905 0.79 +0.3
546,344 + MMJJ_RS02905 0.83 -0.8
546,352 - MMJJ_RS02905 0.85 -0.2
546,439 + +0.5
546,443 + +0.5
546,447 - -0.5
546,449 - -0.5
546,450 + +0.7
546,450 + +0.4
546,451 - +0.9
546,451 - -0.2
546,478 - -0.8
546,513 - -1.5
546,552 - -0.5
546,552 - -0.1
546,552 - +0.4
546,553 + -0.1
546,553 + -0.2
546,553 + +0.9

Or see this region's nucleotide sequence