Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06493 and H281DRAFT_06494 are separated by 385 nucleotides H281DRAFT_06494 and H281DRAFT_06495 are separated by 807 nucleotides
H281DRAFT_06493: H281DRAFT_06493 - membrane fusion protein, multidrug efflux system, at 37,928 to 39,361
_06493
H281DRAFT_06494: H281DRAFT_06494 - transcriptional regulator, IclR family, at 39,747 to 40,583
_06494
H281DRAFT_06495: H281DRAFT_06495 - Transposase, at 41,391 to 42,422
_06495
Position (kb) 39
40
41 Strain fitness (log2 ratio) -2
-1
0
1 at 38.782 kb on - strand, within H281DRAFT_06493 at 38.929 kb on - strand, within H281DRAFT_06493 at 38.929 kb on - strand, within H281DRAFT_06493 at 39.103 kb on + strand at 39.103 kb on + strand, within H281DRAFT_06493 at 39.103 kb on + strand, within H281DRAFT_06493 at 39.212 kb on - strand, within H281DRAFT_06493 at 39.497 kb on + strand at 39.498 kb on - strand at 39.514 kb on - strand at 39.627 kb on + strand at 39.627 kb on + strand at 39.628 kb on - strand at 39.628 kb on - strand at 39.628 kb on - strand at 39.886 kb on + strand, within H281DRAFT_06494 at 40.366 kb on - strand, within H281DRAFT_06494 at 40.644 kb on - strand at 40.676 kb on - strand at 40.706 kb on + strand at 40.758 kb on - strand at 40.758 kb on - strand at 40.871 kb on + strand at 40.952 kb on - strand at 40.968 kb on + strand at 40.969 kb on - strand at 40.969 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 38,782 - H281DRAFT_06493 0.60 -1.7 38,929 - H281DRAFT_06493 0.70 +0.5 38,929 - H281DRAFT_06493 0.70 -0.1 39,103 + +1.3 39,103 + H281DRAFT_06493 0.82 -1.2 39,103 + H281DRAFT_06493 0.82 -0.4 39,212 - H281DRAFT_06493 0.90 +1.5 39,497 + +1.2 39,498 - -1.5 39,514 - +0.0 39,627 + +0.2 39,627 + +0.1 39,628 - +0.7 39,628 - -0.4 39,628 - +0.5 39,886 + H281DRAFT_06494 0.17 -2.2 40,366 - H281DRAFT_06494 0.74 -0.6 40,644 - -0.8 40,676 - +1.3 40,706 + +1.4 40,758 - -1.5 40,758 - -0.9 40,871 + -1.3 40,952 - +0.2 40,968 + -0.9 40,969 - -0.5 40,969 - -0.9
Or see this region's nucleotide sequence