Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06344 and H281DRAFT_06345 are separated by 135 nucleotides H281DRAFT_06345 and H281DRAFT_06346 are separated by 32 nucleotides
H281DRAFT_06344: H281DRAFT_06344 - transcriptional regulator, LysR family, at 18,362 to 19,285
_06344
H281DRAFT_06345: H281DRAFT_06345 - tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase, at 19,421 to 20,503
_06345
H281DRAFT_06346: H281DRAFT_06346 - Predicted deacylase, at 20,536 to 21,525
_06346
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 18.776 kb on + strand, within H281DRAFT_06344 at 18.776 kb on + strand, within H281DRAFT_06344 at 18.839 kb on - strand, within H281DRAFT_06344 at 18.986 kb on - strand at 18.986 kb on - strand, within H281DRAFT_06344 at 19.072 kb on + strand, within H281DRAFT_06344 at 19.176 kb on + strand, within H281DRAFT_06344 at 19.176 kb on + strand, within H281DRAFT_06344 at 19.177 kb on - strand, within H281DRAFT_06344 at 19.372 kb on + strand at 19.373 kb on - strand at 19.373 kb on - strand at 19.396 kb on - strand at 19.568 kb on + strand, within H281DRAFT_06345 at 19.727 kb on + strand, within H281DRAFT_06345 at 19.888 kb on - strand, within H281DRAFT_06345 at 20.614 kb on + strand at 20.614 kb on + strand at 20.615 kb on - strand at 20.615 kb on - strand at 20.891 kb on + strand, within H281DRAFT_06346 at 21.334 kb on + strand, within H281DRAFT_06346 at 21.334 kb on + strand, within H281DRAFT_06346
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 18,776 + H281DRAFT_06344 0.45 +0.7 18,776 + H281DRAFT_06344 0.45 -0.1 18,839 - H281DRAFT_06344 0.52 -0.7 18,986 - -1.1 18,986 - H281DRAFT_06344 0.68 -2.2 19,072 + H281DRAFT_06344 0.77 +0.5 19,176 + H281DRAFT_06344 0.88 -0.0 19,176 + H281DRAFT_06344 0.88 +1.3 19,177 - H281DRAFT_06344 0.88 +0.7 19,372 + -0.7 19,373 - +0.1 19,373 - -0.7 19,396 - +0.3 19,568 + H281DRAFT_06345 0.14 -1.1 19,727 + H281DRAFT_06345 0.28 -0.1 19,888 - H281DRAFT_06345 0.43 -3.2 20,614 + +0.8 20,614 + +0.6 20,615 - -0.5 20,615 - +1.4 20,891 + H281DRAFT_06346 0.36 +0.4 21,334 + H281DRAFT_06346 0.81 -0.0 21,334 + H281DRAFT_06346 0.81 -1.4
Or see this region's nucleotide sequence