Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05985 and H281DRAFT_05986 are separated by 463 nucleotides H281DRAFT_05986 and H281DRAFT_05987 are separated by 272 nucleotides
H281DRAFT_05985: H281DRAFT_05985 - Predicted integral membrane protein, at 127,552 to 128,256
_05985
H281DRAFT_05986: H281DRAFT_05986 - transcriptional regulator, TetR family, at 128,720 to 129,355
_05986
H281DRAFT_05987: H281DRAFT_05987 - Thioredoxin reductase, at 129,628 to 130,521
_05987
Position (kb) 128
129
130 Strain fitness (log2 ratio) -2
-1
0
1
2 at 127.793 kb on + strand, within H281DRAFT_05985 at 127.794 kb on - strand, within H281DRAFT_05985 at 127.794 kb on - strand, within H281DRAFT_05985 at 127.794 kb on - strand, within H281DRAFT_05985 at 128.027 kb on + strand, within H281DRAFT_05985 at 128.244 kb on + strand at 128.245 kb on - strand at 128.248 kb on + strand at 128.248 kb on + strand at 128.330 kb on + strand at 128.381 kb on + strand at 128.382 kb on - strand at 128.382 kb on - strand at 128.382 kb on - strand at 128.384 kb on + strand at 128.384 kb on + strand at 128.384 kb on + strand at 128.385 kb on - strand at 128.501 kb on + strand at 128.507 kb on + strand at 128.508 kb on - strand at 128.508 kb on - strand at 128.770 kb on - strand at 128.964 kb on + strand, within H281DRAFT_05986 at 129.195 kb on + strand, within H281DRAFT_05986 at 129.195 kb on + strand, within H281DRAFT_05986 at 129.195 kb on + strand, within H281DRAFT_05986 at 129.946 kb on + strand, within H281DRAFT_05987 at 130.130 kb on + strand, within H281DRAFT_05987 at 130.131 kb on - strand, within H281DRAFT_05987 at 130.131 kb on - strand, within H281DRAFT_05987 at 130.190 kb on + strand, within H281DRAFT_05987 at 130.195 kb on - strand, within H281DRAFT_05987 at 130.337 kb on + strand, within H281DRAFT_05987
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 127,793 + H281DRAFT_05985 0.34 -0.9 127,794 - H281DRAFT_05985 0.34 -0.3 127,794 - H281DRAFT_05985 0.34 +0.3 127,794 - H281DRAFT_05985 0.34 -0.1 128,027 + H281DRAFT_05985 0.67 -1.6 128,244 + +0.0 128,245 - +0.4 128,248 + -1.9 128,248 + +0.8 128,330 + -0.3 128,381 + +0.1 128,382 - -2.6 128,382 - +0.4 128,382 - -0.1 128,384 + +1.6 128,384 + -0.3 128,384 + +0.6 128,385 - +0.1 128,501 + +1.7 128,507 + -0.5 128,508 - +0.4 128,508 - +2.1 128,770 - +0.3 128,964 + H281DRAFT_05986 0.38 -1.1 129,195 + H281DRAFT_05986 0.75 +1.5 129,195 + H281DRAFT_05986 0.75 -0.9 129,195 + H281DRAFT_05986 0.75 -0.0 129,946 + H281DRAFT_05987 0.36 -0.4 130,130 + H281DRAFT_05987 0.56 +0.2 130,131 - H281DRAFT_05987 0.56 -1.0 130,131 - H281DRAFT_05987 0.56 -0.2 130,190 + H281DRAFT_05987 0.63 -0.1 130,195 - H281DRAFT_05987 0.63 -0.7 130,337 + H281DRAFT_05987 0.79 +0.0
Or see this region's nucleotide sequence