Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05878 and H281DRAFT_05879 are separated by 31 nucleotides H281DRAFT_05879 and H281DRAFT_05880 are separated by 75 nucleotides H281DRAFT_05880 and H281DRAFT_05881 are separated by 104 nucleotides
H281DRAFT_05878: H281DRAFT_05878 - Multidrug efflux pump subunit AcrB, at 14,151 to 17,288
_05878
H281DRAFT_05879: H281DRAFT_05879 - DNA-binding transcriptional regulator, MarR family, at 17,320 to 18,009
_05879
H281DRAFT_05880: H281DRAFT_05880 - Aspartate/methionine/tyrosine aminotransferase, at 18,085 to 19,209
_05880
H281DRAFT_05881: H281DRAFT_05881 - D-amino-acid dehydrogenase, at 19,314 to 20,558
_05881
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 17.655 kb on - strand, within H281DRAFT_05879 at 18.121 kb on - strand at 18.470 kb on - strand, within H281DRAFT_05880 at 18.550 kb on - strand, within H281DRAFT_05880 at 18.961 kb on + strand, within H281DRAFT_05880 at 18.990 kb on - strand, within H281DRAFT_05880 at 19.227 kb on + strand at 20.134 kb on + strand at 20.153 kb on + strand, within H281DRAFT_05881
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 17,655 - H281DRAFT_05879 0.49 -0.9 18,121 - -0.5 18,470 - H281DRAFT_05880 0.34 -2.9 18,550 - H281DRAFT_05880 0.41 +0.9 18,961 + H281DRAFT_05880 0.78 +0.6 18,990 - H281DRAFT_05880 0.80 -1.3 19,227 + +1.0 20,134 + -1.5 20,153 + H281DRAFT_05881 0.67 +0.3
Or see this region's nucleotide sequence