Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05701 and H281DRAFT_05702 are separated by 95 nucleotides H281DRAFT_05702 and H281DRAFT_05703 overlap by 4 nucleotides
H281DRAFT_05701: H281DRAFT_05701 - glycerol 3-phosphate ABC transporter ATP-binding protein, at 118,364 to 119,452
_05701
H281DRAFT_05702: H281DRAFT_05702 - glycerol 3-phosphate ABC transporter membrane protein, at 119,548 to 120,393
_05702
H281DRAFT_05703: H281DRAFT_05703 - glycerol 3-phosphate ABC transporter membrane protein /carbohydrate ABC transporter membrane protein 1, CUT1 family, at 120,390 to 121,274
_05703
Position (kb) 119
120
121 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 118.555 kb on + strand, within H281DRAFT_05701 at 118.555 kb on + strand, within H281DRAFT_05701 at 118.556 kb on - strand, within H281DRAFT_05701 at 119.158 kb on - strand, within H281DRAFT_05701 at 119.182 kb on + strand, within H281DRAFT_05701 at 119.191 kb on - strand, within H281DRAFT_05701 at 119.200 kb on - strand, within H281DRAFT_05701 at 119.200 kb on - strand, within H281DRAFT_05701 at 119.751 kb on - strand, within H281DRAFT_05702 at 119.960 kb on + strand, within H281DRAFT_05702 at 119.960 kb on + strand at 119.960 kb on + strand, within H281DRAFT_05702 at 119.960 kb on + strand, within H281DRAFT_05702 at 119.961 kb on - strand, within H281DRAFT_05702 at 119.961 kb on - strand, within H281DRAFT_05702 at 119.964 kb on + strand, within H281DRAFT_05702 at 119.964 kb on + strand, within H281DRAFT_05702 at 119.964 kb on + strand, within H281DRAFT_05702 at 119.964 kb on + strand, within H281DRAFT_05702 at 119.965 kb on - strand, within H281DRAFT_05702 at 119.965 kb on - strand, within H281DRAFT_05702 at 119.965 kb on - strand, within H281DRAFT_05702 at 119.965 kb on - strand, within H281DRAFT_05702 at 119.965 kb on - strand, within H281DRAFT_05702 at 120.220 kb on - strand, within H281DRAFT_05702 at 120.344 kb on - strand at 120.526 kb on + strand, within H281DRAFT_05703 at 120.526 kb on + strand, within H281DRAFT_05703 at 120.604 kb on + strand, within H281DRAFT_05703 at 120.604 kb on + strand, within H281DRAFT_05703 at 120.604 kb on + strand, within H281DRAFT_05703 at 120.745 kb on + strand, within H281DRAFT_05703 at 120.745 kb on + strand, within H281DRAFT_05703 at 120.746 kb on - strand, within H281DRAFT_05703 at 120.764 kb on - strand, within H281DRAFT_05703 at 120.764 kb on - strand, within H281DRAFT_05703 at 120.764 kb on - strand at 120.848 kb on - strand, within H281DRAFT_05703 at 120.934 kb on + strand, within H281DRAFT_05703 at 120.934 kb on + strand, within H281DRAFT_05703 at 120.935 kb on - strand, within H281DRAFT_05703 at 121.075 kb on + strand, within H281DRAFT_05703 at 121.234 kb on + strand at 121.235 kb on - strand at 121.343 kb on + strand at 121.344 kb on - strand at 121.351 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 118,555 + H281DRAFT_05701 0.18 +0.8 118,555 + H281DRAFT_05701 0.18 +1.2 118,556 - H281DRAFT_05701 0.18 +0.2 119,158 - H281DRAFT_05701 0.73 -0.1 119,182 + H281DRAFT_05701 0.75 +0.5 119,191 - H281DRAFT_05701 0.76 -1.0 119,200 - H281DRAFT_05701 0.77 +1.0 119,200 - H281DRAFT_05701 0.77 -0.5 119,751 - H281DRAFT_05702 0.24 +0.5 119,960 + H281DRAFT_05702 0.49 +0.4 119,960 + +2.2 119,960 + H281DRAFT_05702 0.49 +0.1 119,960 + H281DRAFT_05702 0.49 +0.5 119,961 - H281DRAFT_05702 0.49 +0.2 119,961 - H281DRAFT_05702 0.49 +0.7 119,964 + H281DRAFT_05702 0.49 +2.6 119,964 + H281DRAFT_05702 0.49 +0.2 119,964 + H281DRAFT_05702 0.49 +1.2 119,964 + H281DRAFT_05702 0.49 +0.5 119,965 - H281DRAFT_05702 0.49 +2.2 119,965 - H281DRAFT_05702 0.49 +0.9 119,965 - H281DRAFT_05702 0.49 +0.5 119,965 - H281DRAFT_05702 0.49 +1.9 119,965 - H281DRAFT_05702 0.49 +2.2 120,220 - H281DRAFT_05702 0.79 +0.4 120,344 - -3.0 120,526 + H281DRAFT_05703 0.15 +1.5 120,526 + H281DRAFT_05703 0.15 +0.7 120,604 + H281DRAFT_05703 0.24 -0.8 120,604 + H281DRAFT_05703 0.24 -0.2 120,604 + H281DRAFT_05703 0.24 -1.3 120,745 + H281DRAFT_05703 0.40 +0.2 120,745 + H281DRAFT_05703 0.40 +0.3 120,746 - H281DRAFT_05703 0.40 +0.2 120,764 - H281DRAFT_05703 0.42 -1.8 120,764 - H281DRAFT_05703 0.42 +0.1 120,764 - +3.2 120,848 - H281DRAFT_05703 0.52 -1.2 120,934 + H281DRAFT_05703 0.61 -0.8 120,934 + H281DRAFT_05703 0.61 -1.4 120,935 - H281DRAFT_05703 0.62 +0.5 121,075 + H281DRAFT_05703 0.77 +0.3 121,234 + +1.0 121,235 - -0.4 121,343 + -0.1 121,344 - +0.4 121,351 + -0.4
Or see this region's nucleotide sequence