Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05224 and H281DRAFT_05225 are separated by 353 nucleotides H281DRAFT_05225 and H281DRAFT_05226 are separated by 521 nucleotides
H281DRAFT_05224: H281DRAFT_05224 - magnesium transporter, at 184,769 to 185,746
_05224
H281DRAFT_05225: H281DRAFT_05225 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 186,100 to 187,062
_05225
H281DRAFT_05226: H281DRAFT_05226 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 187,584 to 189,179
_05226
Position (kb) 186
187
188 Strain fitness (log2 ratio) -1
0
1
2 at 185.189 kb on + strand, within H281DRAFT_05224 at 185.325 kb on - strand, within H281DRAFT_05224 at 185.438 kb on + strand, within H281DRAFT_05224 at 185.439 kb on - strand, within H281DRAFT_05224 at 185.453 kb on + strand, within H281DRAFT_05224 at 185.621 kb on + strand, within H281DRAFT_05224 at 185.881 kb on - strand at 185.893 kb on + strand at 185.894 kb on - strand at 186.051 kb on + strand at 186.052 kb on - strand at 186.052 kb on - strand at 186.055 kb on + strand at 186.061 kb on + strand at 186.095 kb on + strand at 186.095 kb on + strand at 186.096 kb on - strand at 186.096 kb on - strand at 186.182 kb on - strand at 186.182 kb on - strand at 186.315 kb on + strand, within H281DRAFT_05225 at 186.578 kb on - strand, within H281DRAFT_05225 at 186.773 kb on - strand, within H281DRAFT_05225 at 187.242 kb on + strand at 187.243 kb on - strand at 187.379 kb on - strand at 187.431 kb on + strand at 187.431 kb on + strand at 187.432 kb on - strand at 188.024 kb on + strand, within H281DRAFT_05226
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 185,189 + H281DRAFT_05224 0.43 +0.4 185,325 - H281DRAFT_05224 0.57 +1.5 185,438 + H281DRAFT_05224 0.68 -0.2 185,439 - H281DRAFT_05224 0.69 +0.7 185,453 + H281DRAFT_05224 0.70 -0.0 185,621 + H281DRAFT_05224 0.87 +0.7 185,881 - -0.8 185,893 + +0.4 185,894 - +0.3 186,051 + -0.0 186,052 - -0.1 186,052 - +0.8 186,055 + -0.6 186,061 + +0.8 186,095 + +0.4 186,095 + +0.4 186,096 - -0.7 186,096 - +2.2 186,182 - +0.2 186,182 - -0.5 186,315 + H281DRAFT_05225 0.22 +1.2 186,578 - H281DRAFT_05225 0.50 -0.1 186,773 - H281DRAFT_05225 0.70 +0.7 187,242 + -0.3 187,243 - -0.2 187,379 - +0.4 187,431 + -1.3 187,431 + +0.1 187,432 - +0.4 188,024 + H281DRAFT_05226 0.28 +1.2
Or see this region's nucleotide sequence