Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05222 and H281DRAFT_05223 overlap by 4 nucleotides H281DRAFT_05223 and H281DRAFT_05224 are separated by 69 nucleotides H281DRAFT_05224 and H281DRAFT_05225 are separated by 353 nucleotides
H281DRAFT_05222: H281DRAFT_05222 - Dephospho-CoA kinase, at 183,783 to 184,403
_05222
H281DRAFT_05223: H281DRAFT_05223 - hypothetical protein, at 184,400 to 184,699
_05223
H281DRAFT_05224: H281DRAFT_05224 - magnesium transporter, at 184,769 to 185,746
_05224
H281DRAFT_05225: H281DRAFT_05225 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 186,100 to 187,062
_05225
Position (kb) 184
185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 183.941 kb on - strand, within H281DRAFT_05222 at 184.266 kb on - strand, within H281DRAFT_05222 at 184.268 kb on - strand, within H281DRAFT_05222 at 184.268 kb on - strand, within H281DRAFT_05222 at 184.268 kb on - strand, within H281DRAFT_05222 at 184.276 kb on + strand, within H281DRAFT_05222 at 184.385 kb on + strand at 184.386 kb on - strand at 184.462 kb on + strand, within H281DRAFT_05223 at 184.462 kb on + strand, within H281DRAFT_05223 at 184.462 kb on + strand, within H281DRAFT_05223 at 184.652 kb on - strand, within H281DRAFT_05223 at 184.652 kb on - strand, within H281DRAFT_05223 at 184.722 kb on - strand at 184.879 kb on - strand, within H281DRAFT_05224 at 185.017 kb on + strand, within H281DRAFT_05224 at 185.018 kb on - strand, within H281DRAFT_05224 at 185.067 kb on + strand at 185.080 kb on + strand, within H281DRAFT_05224 at 185.080 kb on + strand, within H281DRAFT_05224 at 185.081 kb on - strand, within H281DRAFT_05224 at 185.081 kb on - strand, within H281DRAFT_05224 at 185.084 kb on + strand, within H281DRAFT_05224 at 185.085 kb on - strand, within H281DRAFT_05224 at 185.189 kb on + strand, within H281DRAFT_05224 at 185.325 kb on - strand, within H281DRAFT_05224 at 185.438 kb on + strand, within H281DRAFT_05224 at 185.439 kb on - strand, within H281DRAFT_05224 at 185.453 kb on + strand, within H281DRAFT_05224 at 185.621 kb on + strand, within H281DRAFT_05224 at 185.881 kb on - strand at 185.893 kb on + strand at 185.894 kb on - strand at 186.051 kb on + strand at 186.052 kb on - strand at 186.052 kb on - strand at 186.055 kb on + strand at 186.061 kb on + strand at 186.095 kb on + strand at 186.095 kb on + strand at 186.096 kb on - strand at 186.096 kb on - strand at 186.182 kb on - strand at 186.182 kb on - strand at 186.315 kb on + strand, within H281DRAFT_05225 at 186.578 kb on - strand, within H281DRAFT_05225
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 183,941 - H281DRAFT_05222 0.25 -0.1 184,266 - H281DRAFT_05222 0.78 +0.6 184,268 - H281DRAFT_05222 0.78 -0.0 184,268 - H281DRAFT_05222 0.78 +0.1 184,268 - H281DRAFT_05222 0.78 +0.0 184,276 + H281DRAFT_05222 0.79 +0.3 184,385 + +0.1 184,386 - -2.8 184,462 + H281DRAFT_05223 0.21 -0.9 184,462 + H281DRAFT_05223 0.21 +0.4 184,462 + H281DRAFT_05223 0.21 +0.4 184,652 - H281DRAFT_05223 0.84 +0.8 184,652 - H281DRAFT_05223 0.84 +0.5 184,722 - +1.2 184,879 - H281DRAFT_05224 0.11 -0.5 185,017 + H281DRAFT_05224 0.25 +0.7 185,018 - H281DRAFT_05224 0.25 -1.1 185,067 + +0.7 185,080 + H281DRAFT_05224 0.32 +0.0 185,080 + H281DRAFT_05224 0.32 +0.2 185,081 - H281DRAFT_05224 0.32 +0.4 185,081 - H281DRAFT_05224 0.32 +1.2 185,084 + H281DRAFT_05224 0.32 +0.5 185,085 - H281DRAFT_05224 0.32 -0.4 185,189 + H281DRAFT_05224 0.43 +0.4 185,325 - H281DRAFT_05224 0.57 +1.5 185,438 + H281DRAFT_05224 0.68 -0.2 185,439 - H281DRAFT_05224 0.69 +0.7 185,453 + H281DRAFT_05224 0.70 -0.0 185,621 + H281DRAFT_05224 0.87 +0.7 185,881 - -0.8 185,893 + +0.4 185,894 - +0.3 186,051 + -0.0 186,052 - -0.1 186,052 - +0.8 186,055 + -0.6 186,061 + +0.8 186,095 + +0.4 186,095 + +0.4 186,096 - -0.7 186,096 - +2.2 186,182 - +0.2 186,182 - -0.5 186,315 + H281DRAFT_05225 0.22 +1.2 186,578 - H281DRAFT_05225 0.50 -0.1
Or see this region's nucleotide sequence