Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05048 and H281DRAFT_05049 overlap by 1 nucleotides H281DRAFT_05049 and H281DRAFT_05050 are separated by 361 nucleotides H281DRAFT_05050 and H281DRAFT_05051 are separated by 160 nucleotides
H281DRAFT_05048: H281DRAFT_05048 - Tripartite tricarboxylate transporter TctA family protein, at 237,681 to 239,060
_05048
H281DRAFT_05049: H281DRAFT_05049 - hypothetical protein, at 239,060 to 239,560
_05049
H281DRAFT_05050: H281DRAFT_05050 - 3-hydroxy-3-methylglutaryl-coenzyme A reductase, at 239,922 to 241,208
_05050
H281DRAFT_05051: H281DRAFT_05051 - transcriptional regulator, GntR family, at 241,369 to 242,757
_05051
Position (kb) 239
240
241
242 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 239.332 kb on - strand, within H281DRAFT_05049 at 239.417 kb on + strand, within H281DRAFT_05049 at 239.465 kb on + strand, within H281DRAFT_05049 at 239.466 kb on - strand, within H281DRAFT_05049 at 239.749 kb on + strand at 239.750 kb on - strand at 239.750 kb on - strand at 239.952 kb on + strand at 240.036 kb on + strand at 240.066 kb on - strand, within H281DRAFT_05050 at 240.066 kb on - strand, within H281DRAFT_05050 at 240.328 kb on + strand, within H281DRAFT_05050 at 240.329 kb on - strand, within H281DRAFT_05050 at 240.454 kb on + strand, within H281DRAFT_05050 at 240.494 kb on - strand, within H281DRAFT_05050 at 240.636 kb on - strand, within H281DRAFT_05050 at 240.765 kb on + strand, within H281DRAFT_05050 at 241.112 kb on - strand at 241.112 kb on - strand at 241.210 kb on - strand at 241.263 kb on - strand at 241.273 kb on + strand at 241.480 kb on + strand at 241.926 kb on - strand, within H281DRAFT_05051 at 241.959 kb on - strand, within H281DRAFT_05051 at 242.019 kb on + strand, within H281DRAFT_05051 at 242.042 kb on + strand, within H281DRAFT_05051
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 239,332 - H281DRAFT_05049 0.54 -2.0 239,417 + H281DRAFT_05049 0.71 +1.4 239,465 + H281DRAFT_05049 0.81 +3.6 239,466 - H281DRAFT_05049 0.81 +1.2 239,749 + -4.1 239,750 - -1.7 239,750 - +0.6 239,952 + -0.5 240,036 + -0.0 240,066 - H281DRAFT_05050 0.11 +0.5 240,066 - H281DRAFT_05050 0.11 +0.2 240,328 + H281DRAFT_05050 0.32 -0.1 240,329 - H281DRAFT_05050 0.32 -2.1 240,454 + H281DRAFT_05050 0.41 -1.6 240,494 - H281DRAFT_05050 0.44 +0.1 240,636 - H281DRAFT_05050 0.55 +0.2 240,765 + H281DRAFT_05050 0.66 -1.0 241,112 - +1.7 241,112 - -0.5 241,210 - -2.0 241,263 - +0.2 241,273 + -0.6 241,480 + +0.1 241,926 - H281DRAFT_05051 0.40 -0.7 241,959 - H281DRAFT_05051 0.42 -0.0 242,019 + H281DRAFT_05051 0.47 -0.4 242,042 + H281DRAFT_05051 0.48 -0.3
Or see this region's nucleotide sequence