Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05020 and H281DRAFT_05021 are separated by 163 nucleotides H281DRAFT_05021 and H281DRAFT_05022 are separated by 180 nucleotides H281DRAFT_05022 and H281DRAFT_05023 are separated by 116 nucleotides
H281DRAFT_05020: H281DRAFT_05020 - Signal transduction histidine kinase, at 205,018 to 206,103
_05020
H281DRAFT_05021: H281DRAFT_05021 - Response regulator, at 206,267 to 206,644
_05021
H281DRAFT_05022: H281DRAFT_05022 - two component transcriptional regulator, LuxR family, at 206,825 to 207,511
_05022
H281DRAFT_05023: H281DRAFT_05023 - Predicted ATPase, at 207,628 to 212,706
_05023
Position (kb) 206
207
208 Strain fitness (log2 ratio) -2
-1
0
1 at 206.399 kb on + strand, within H281DRAFT_05021 at 206.448 kb on - strand, within H281DRAFT_05021 at 206.711 kb on - strand at 206.738 kb on - strand at 206.738 kb on - strand at 206.741 kb on + strand at 206.820 kb on + strand at 206.843 kb on + strand at 207.203 kb on + strand, within H281DRAFT_05022 at 207.203 kb on + strand, within H281DRAFT_05022 at 207.629 kb on + strand at 207.629 kb on + strand at 207.630 kb on - strand at 208.248 kb on + strand, within H281DRAFT_05023 at 208.249 kb on - strand, within H281DRAFT_05023
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 206,399 + H281DRAFT_05021 0.35 -0.8 206,448 - H281DRAFT_05021 0.48 -0.5 206,711 - -0.1 206,738 - +0.2 206,738 - +0.5 206,741 + -0.3 206,820 + +0.3 206,843 + -0.0 207,203 + H281DRAFT_05022 0.55 +0.5 207,203 + H281DRAFT_05022 0.55 -1.6 207,629 + +0.9 207,629 + -0.4 207,630 - -1.8 208,248 + H281DRAFT_05023 0.12 -0.5 208,249 - H281DRAFT_05023 0.12 +1.4
Or see this region's nucleotide sequence