Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04915

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04914 and H281DRAFT_04915 are separated by 39 nucleotidesH281DRAFT_04915 and H281DRAFT_04916 are separated by 122 nucleotides H281DRAFT_04914: H281DRAFT_04914 - CheW protein, at 74,259 to 75,233 _04914 H281DRAFT_04915: H281DRAFT_04915 - asparaginase, at 75,273 to 76,379 _04915 H281DRAFT_04916: H281DRAFT_04916 - Imidazolonepropionase, at 76,502 to 77,749 _04916 Position (kb) 75 76 77Strain fitness (log2 ratio) -1 0 1 2at 74.694 kb on + strand, within H281DRAFT_04914at 75.153 kb on + strandat 75.154 kb on - strandat 75.154 kb on - strandat 75.351 kb on - strandat 75.615 kb on + strand, within H281DRAFT_04915at 75.674 kb on - strand, within H281DRAFT_04915at 76.020 kb on + strand, within H281DRAFT_04915at 76.268 kb on - strand, within H281DRAFT_04915at 76.444 kb on + strandat 76.445 kb on - strandat 76.557 kb on + strandat 76.824 kb on + strand, within H281DRAFT_04916at 76.927 kb on - strand, within H281DRAFT_04916at 77.058 kb on + strand, within H281DRAFT_04916at 77.059 kb on - strand, within H281DRAFT_04916at 77.076 kb on + strand, within H281DRAFT_04916at 77.076 kb on + strand, within H281DRAFT_04916at 77.076 kb on + strand, within H281DRAFT_04916

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
remove
74,694 + H281DRAFT_04914 0.45 -0.2
75,153 + -0.9
75,154 - -1.4
75,154 - -0.7
75,351 - +0.5
75,615 + H281DRAFT_04915 0.31 -0.8
75,674 - H281DRAFT_04915 0.36 +0.4
76,020 + H281DRAFT_04915 0.67 +1.7
76,268 - H281DRAFT_04915 0.90 +0.4
76,444 + +1.1
76,445 - +2.2
76,557 + +0.9
76,824 + H281DRAFT_04916 0.26 -0.2
76,927 - H281DRAFT_04916 0.34 -0.6
77,058 + H281DRAFT_04916 0.45 +0.0
77,059 - H281DRAFT_04916 0.45 +0.8
77,076 + H281DRAFT_04916 0.46 +1.1
77,076 + H281DRAFT_04916 0.46 +0.8
77,076 + H281DRAFT_04916 0.46 +0.4

Or see this region's nucleotide sequence