Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04803 and H281DRAFT_04804 are separated by 856 nucleotides H281DRAFT_04804 and H281DRAFT_04805 are separated by 130 nucleotides
H281DRAFT_04803: H281DRAFT_04803 - hypothetical protein, at 235,565 to 237,127
_04803
H281DRAFT_04804: H281DRAFT_04804 - hypothetical protein, at 237,984 to 239,099
_04804
H281DRAFT_04805: H281DRAFT_04805 - methyltransferase, FkbM family, at 239,230 to 240,135
_04805
Position (kb) 237
238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 237.073 kb on + strand at 237.182 kb on + strand at 237.262 kb on + strand at 237.310 kb on + strand at 237.610 kb on - strand at 237.708 kb on + strand at 237.812 kb on + strand at 237.812 kb on + strand at 237.812 kb on + strand at 237.813 kb on - strand at 237.861 kb on + strand at 238.108 kb on + strand, within H281DRAFT_04804 at 238.108 kb on + strand, within H281DRAFT_04804 at 238.108 kb on + strand, within H281DRAFT_04804 at 238.108 kb on + strand, within H281DRAFT_04804 at 238.112 kb on + strand, within H281DRAFT_04804 at 238.112 kb on + strand, within H281DRAFT_04804 at 238.113 kb on - strand, within H281DRAFT_04804 at 238.204 kb on + strand, within H281DRAFT_04804 at 238.290 kb on + strand, within H281DRAFT_04804 at 238.290 kb on + strand, within H281DRAFT_04804 at 238.337 kb on - strand, within H281DRAFT_04804 at 238.337 kb on - strand, within H281DRAFT_04804 at 238.359 kb on - strand, within H281DRAFT_04804 at 238.470 kb on + strand, within H281DRAFT_04804 at 238.548 kb on + strand, within H281DRAFT_04804 at 238.577 kb on + strand, within H281DRAFT_04804 at 238.577 kb on + strand, within H281DRAFT_04804 at 238.654 kb on - strand, within H281DRAFT_04804 at 239.067 kb on - strand at 239.125 kb on - strand at 239.144 kb on + strand at 239.163 kb on + strand at 239.231 kb on + strand at 239.393 kb on + strand, within H281DRAFT_04805 at 239.526 kb on - strand, within H281DRAFT_04805 at 239.900 kb on + strand, within H281DRAFT_04805 at 240.086 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 237,073 + +1.1 237,182 + -2.8 237,262 + +0.5 237,310 + -0.5 237,610 - -0.6 237,708 + +0.1 237,812 + +2.3 237,812 + +0.0 237,812 + -3.2 237,813 - -0.0 237,861 + -0.2 238,108 + H281DRAFT_04804 0.11 -0.3 238,108 + H281DRAFT_04804 0.11 -1.4 238,108 + H281DRAFT_04804 0.11 +0.9 238,108 + H281DRAFT_04804 0.11 +0.8 238,112 + H281DRAFT_04804 0.11 -2.4 238,112 + H281DRAFT_04804 0.11 +1.0 238,113 - H281DRAFT_04804 0.12 +1.3 238,204 + H281DRAFT_04804 0.20 -0.3 238,290 + H281DRAFT_04804 0.27 +1.0 238,290 + H281DRAFT_04804 0.27 +1.0 238,337 - H281DRAFT_04804 0.32 +0.1 238,337 - H281DRAFT_04804 0.32 -0.8 238,359 - H281DRAFT_04804 0.34 -2.2 238,470 + H281DRAFT_04804 0.44 -0.9 238,548 + H281DRAFT_04804 0.51 -0.1 238,577 + H281DRAFT_04804 0.53 +0.7 238,577 + H281DRAFT_04804 0.53 -0.3 238,654 - H281DRAFT_04804 0.60 +0.6 239,067 - +1.4 239,125 - -0.6 239,144 + +0.2 239,163 + -2.0 239,231 + -0.2 239,393 + H281DRAFT_04805 0.18 -2.6 239,526 - H281DRAFT_04805 0.33 -0.9 239,900 + H281DRAFT_04805 0.74 -0.3 240,086 + +1.2
Or see this region's nucleotide sequence