Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04290

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04289 and H281DRAFT_04290 are separated by 21 nucleotidesH281DRAFT_04290 and H281DRAFT_04291 are separated by 241 nucleotides H281DRAFT_04289: H281DRAFT_04289 - DNA repair photolyase, at 5,295 to 6,440 _04289 H281DRAFT_04290: H281DRAFT_04290 - TM2 domain-containing membrane protein YozV, at 6,462 to 6,929 _04290 H281DRAFT_04291: H281DRAFT_04291 - hypothetical protein, at 7,171 to 8,340 _04291 Position (kb) 6 7Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5.471 kb on + strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.579 kb on + strand, within H281DRAFT_04289at 5.579 kb on + strand, within H281DRAFT_04289at 5.579 kb on + strand, within H281DRAFT_04289at 5.579 kb on + strandat 5.579 kb on + strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.583 kb on + strand, within H281DRAFT_04289at 5.583 kb on + strand, within H281DRAFT_04289at 5.584 kb on - strand, within H281DRAFT_04289at 5.610 kb on + strand, within H281DRAFT_04289at 5.610 kb on + strand, within H281DRAFT_04289at 5.610 kb on + strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.653 kb on - strand, within H281DRAFT_04289at 5.706 kb on + strand, within H281DRAFT_04289at 5.802 kb on - strand, within H281DRAFT_04289at 5.802 kb on - strand, within H281DRAFT_04289at 5.876 kb on + strandat 5.897 kb on + strand, within H281DRAFT_04289at 5.897 kb on + strand, within H281DRAFT_04289at 5.919 kb on - strand, within H281DRAFT_04289at 5.923 kb on + strand, within H281DRAFT_04289at 5.923 kb on + strand, within H281DRAFT_04289at 5.924 kb on - strand, within H281DRAFT_04289at 5.942 kb on + strand, within H281DRAFT_04289at 6.117 kb on + strand, within H281DRAFT_04289at 6.118 kb on - strand, within H281DRAFT_04289at 6.118 kb on - strand, within H281DRAFT_04289at 6.119 kb on + strand, within H281DRAFT_04289at 6.233 kb on + strand, within H281DRAFT_04289at 6.233 kb on + strand, within H281DRAFT_04289at 6.234 kb on - strand, within H281DRAFT_04289at 6.241 kb on - strand, within H281DRAFT_04289at 6.363 kb on - strandat 6.439 kb on - strandat 6.506 kb on - strandat 6.582 kb on + strand, within H281DRAFT_04290at 6.583 kb on - strand, within H281DRAFT_04290at 6.583 kb on - strand, within H281DRAFT_04290at 6.662 kb on - strand, within H281DRAFT_04290at 6.826 kb on + strand, within H281DRAFT_04290at 6.826 kb on + strand, within H281DRAFT_04290at 6.832 kb on + strand, within H281DRAFT_04290at 6.832 kb on + strand, within H281DRAFT_04290at 6.885 kb on - strandat 6.885 kb on - strandat 6.885 kb on - strandat 6.902 kb on - strandat 6.931 kb on + strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.932 kb on - strandat 6.946 kb on + strandat 6.946 kb on + strandat 7.024 kb on + strandat 7.024 kb on + strandat 7.025 kb on - strandat 7.025 kb on - strandat 7.057 kb on - strandat 7.184 kb on + strandat 7.184 kb on + strandat 7.185 kb on - strandat 7.185 kb on - strandat 7.185 kb on - strandat 7.196 kb on + strandat 7.196 kb on + strandat 7.197 kb on - strandat 7.197 kb on - strandat 7.197 kb on - strandat 7.200 kb on + strandat 7.200 kb on + strandat 7.200 kb on + strandat 7.201 kb on - strandat 7.212 kb on - strandat 7.225 kb on - strandat 7.451 kb on + strand, within H281DRAFT_04291at 7.451 kb on + strand, within H281DRAFT_04291at 7.451 kb on + strand, within H281DRAFT_04291at 7.451 kb on + strand, within H281DRAFT_04291at 7.452 kb on - strand, within H281DRAFT_04291at 7.452 kb on - strand, within H281DRAFT_04291at 7.486 kb on + strand, within H281DRAFT_04291at 7.486 kb on + strand, within H281DRAFT_04291at 7.486 kb on + strand, within H281DRAFT_04291at 7.487 kb on - strand, within H281DRAFT_04291at 7.487 kb on - strand, within H281DRAFT_04291at 7.487 kb on - strand, within H281DRAFT_04291at 7.487 kb on - strand, within H281DRAFT_04291at 7.506 kb on + strand, within H281DRAFT_04291at 7.568 kb on + strand, within H281DRAFT_04291at 7.666 kb on + strandat 7.666 kb on + strand, within H281DRAFT_04291at 7.666 kb on + strand, within H281DRAFT_04291at 7.666 kb on + strand, within H281DRAFT_04291at 7.667 kb on - strand, within H281DRAFT_04291at 7.667 kb on - strand, within H281DRAFT_04291at 7.667 kb on - strand, within H281DRAFT_04291at 7.711 kb on + strand, within H281DRAFT_04291at 7.711 kb on + strand, within H281DRAFT_04291at 7.711 kb on + strand, within H281DRAFT_04291at 7.711 kb on + strand, within H281DRAFT_04291at 7.712 kb on - strand, within H281DRAFT_04291at 7.712 kb on - strand, within H281DRAFT_04291at 7.712 kb on - strand, within H281DRAFT_04291at 7.800 kb on + strand, within H281DRAFT_04291at 7.800 kb on + strand, within H281DRAFT_04291at 7.823 kb on + strand, within H281DRAFT_04291at 7.823 kb on + strand, within H281DRAFT_04291at 7.824 kb on - strand, within H281DRAFT_04291at 7.824 kb on - strand, within H281DRAFT_04291at 7.897 kb on + strand, within H281DRAFT_04291at 7.897 kb on + strand, within H281DRAFT_04291at 7.898 kb on - strand, within H281DRAFT_04291at 7.921 kb on - strand, within H281DRAFT_04291at 7.921 kb on - strand, within H281DRAFT_04291

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
remove
5,471 + H281DRAFT_04289 0.15 +0.5
5,472 - H281DRAFT_04289 0.15 -0.8
5,472 - H281DRAFT_04289 0.15 -0.6
5,472 - H281DRAFT_04289 0.15 +0.8
5,516 + H281DRAFT_04289 0.19 +0.5
5,516 + H281DRAFT_04289 0.19 -0.2
5,516 + H281DRAFT_04289 0.19 -0.5
5,516 + H281DRAFT_04289 0.19 -0.7
5,517 - H281DRAFT_04289 0.19 +1.3
5,517 - H281DRAFT_04289 0.19 +0.9
5,517 - H281DRAFT_04289 0.19 -0.3
5,517 - H281DRAFT_04289 0.19 -0.2
5,579 + H281DRAFT_04289 0.25 +0.5
5,579 + H281DRAFT_04289 0.25 -0.6
5,579 + H281DRAFT_04289 0.25 +1.6
5,579 + -1.2
5,579 + H281DRAFT_04289 0.25 +0.8
5,580 - H281DRAFT_04289 0.25 -2.2
5,580 - H281DRAFT_04289 0.25 -0.4
5,580 - H281DRAFT_04289 0.25 -2.3
5,580 - H281DRAFT_04289 0.25 -0.2
5,583 + H281DRAFT_04289 0.25 +0.7
5,583 + H281DRAFT_04289 0.25 -0.2
5,584 - H281DRAFT_04289 0.25 -0.1
5,610 + H281DRAFT_04289 0.27 +0.4
5,610 + H281DRAFT_04289 0.27 +0.6
5,610 + H281DRAFT_04289 0.27 +0.6
5,611 - H281DRAFT_04289 0.28 +0.8
5,611 - H281DRAFT_04289 0.28 +0.1
5,611 - H281DRAFT_04289 0.28 +1.4
5,611 - H281DRAFT_04289 0.28 +1.4
5,652 + H281DRAFT_04289 0.31 -0.3
5,652 + H281DRAFT_04289 0.31 -0.2
5,652 + H281DRAFT_04289 0.31 -0.3
5,652 + H281DRAFT_04289 0.31 +0.1
5,652 + H281DRAFT_04289 0.31 -0.4
5,652 + H281DRAFT_04289 0.31 +0.2
5,653 - H281DRAFT_04289 0.31 -1.0
5,706 + H281DRAFT_04289 0.36 -0.7
5,802 - H281DRAFT_04289 0.44 +0.6
5,802 - H281DRAFT_04289 0.44 -0.7
5,876 + +0.8
5,897 + H281DRAFT_04289 0.53 -0.9
5,897 + H281DRAFT_04289 0.53 +0.3
5,919 - H281DRAFT_04289 0.54 -0.7
5,923 + H281DRAFT_04289 0.55 +0.9
5,923 + H281DRAFT_04289 0.55 -0.3
5,924 - H281DRAFT_04289 0.55 +0.3
5,942 + H281DRAFT_04289 0.56 -0.5
6,117 + H281DRAFT_04289 0.72 -0.4
6,118 - H281DRAFT_04289 0.72 +0.1
6,118 - H281DRAFT_04289 0.72 -1.0
6,119 + H281DRAFT_04289 0.72 -1.0
6,233 + H281DRAFT_04289 0.82 +0.8
6,233 + H281DRAFT_04289 0.82 +0.7
6,234 - H281DRAFT_04289 0.82 -0.7
6,241 - H281DRAFT_04289 0.83 +0.4
6,363 - -0.4
6,439 - +2.4
6,506 - -0.2
6,582 + H281DRAFT_04290 0.26 -2.5
6,583 - H281DRAFT_04290 0.26 -1.1
6,583 - H281DRAFT_04290 0.26 -2.8
6,662 - H281DRAFT_04290 0.43 -0.2
6,826 + H281DRAFT_04290 0.78 -0.2
6,826 + H281DRAFT_04290 0.78 -2.2
6,832 + H281DRAFT_04290 0.79 -0.5
6,832 + H281DRAFT_04290 0.79 -1.2
6,885 - -0.5
6,885 - -0.3
6,885 - +0.4
6,902 - +0.1
6,931 + -2.7
6,932 - +0.2
6,932 - +0.3
6,932 - -0.6
6,932 - -0.1
6,932 - -0.6
6,932 - -0.5
6,932 - +1.2
6,946 + -0.1
6,946 + +0.6
7,024 + +1.3
7,024 + -0.0
7,025 - -0.1
7,025 - +0.6
7,057 - +1.0
7,184 + -0.0
7,184 + -0.0
7,185 - +0.0
7,185 - +0.8
7,185 - -0.8
7,196 + +0.1
7,196 + -0.4
7,197 - -0.6
7,197 - +0.2
7,197 - -0.2
7,200 + -0.5
7,200 + -0.2
7,200 + -0.2
7,201 - +1.6
7,212 - -0.4
7,225 - +0.4
7,451 + H281DRAFT_04291 0.24 -0.6
7,451 + H281DRAFT_04291 0.24 -0.1
7,451 + H281DRAFT_04291 0.24 +0.1
7,451 + H281DRAFT_04291 0.24 +1.5
7,452 - H281DRAFT_04291 0.24 -0.7
7,452 - H281DRAFT_04291 0.24 +0.1
7,486 + H281DRAFT_04291 0.27 +1.6
7,486 + H281DRAFT_04291 0.27 +1.0
7,486 + H281DRAFT_04291 0.27 +0.8
7,487 - H281DRAFT_04291 0.27 -1.5
7,487 - H281DRAFT_04291 0.27 +0.2
7,487 - H281DRAFT_04291 0.27 -0.5
7,487 - H281DRAFT_04291 0.27 -0.8
7,506 + H281DRAFT_04291 0.29 -0.4
7,568 + H281DRAFT_04291 0.34 +0.0
7,666 + +1.6
7,666 + H281DRAFT_04291 0.42 +0.8
7,666 + H281DRAFT_04291 0.42 +0.3
7,666 + H281DRAFT_04291 0.42 +0.5
7,667 - H281DRAFT_04291 0.42 -0.3
7,667 - H281DRAFT_04291 0.42 +0.2
7,667 - H281DRAFT_04291 0.42 -0.0
7,711 + H281DRAFT_04291 0.46 -0.1
7,711 + H281DRAFT_04291 0.46 +0.4
7,711 + H281DRAFT_04291 0.46 +1.4
7,711 + H281DRAFT_04291 0.46 -0.2
7,712 - H281DRAFT_04291 0.46 -1.1
7,712 - H281DRAFT_04291 0.46 -0.5
7,712 - H281DRAFT_04291 0.46 +0.5
7,800 + H281DRAFT_04291 0.54 -1.0
7,800 + H281DRAFT_04291 0.54 -1.0
7,823 + H281DRAFT_04291 0.56 -0.8
7,823 + H281DRAFT_04291 0.56 -0.2
7,824 - H281DRAFT_04291 0.56 +0.3
7,824 - H281DRAFT_04291 0.56 +1.0
7,897 + H281DRAFT_04291 0.62 +0.6
7,897 + H281DRAFT_04291 0.62 -0.2
7,898 - H281DRAFT_04291 0.62 +0.4
7,921 - H281DRAFT_04291 0.64 +0.1
7,921 - H281DRAFT_04291 0.64 -1.2

Or see this region's nucleotide sequence