Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04147 and H281DRAFT_04148 are separated by 43 nucleotides H281DRAFT_04148 and H281DRAFT_04149 overlap by 14 nucleotides
H281DRAFT_04147: H281DRAFT_04147 - L-iditol 2-dehydrogenase, at 257,248 to 258,345
_04147
H281DRAFT_04148: H281DRAFT_04148 - monosaccharide ABC transporter membrane protein, CUT2 family, at 258,389 to 259,396
_04148
H281DRAFT_04149: H281DRAFT_04149 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 259,383 to 260,903
_04149
Position (kb) 258
259
260 Strain fitness (log2 ratio) -2
-1
0
1 at 257.568 kb on + strand, within H281DRAFT_04147 at 257.569 kb on - strand, within H281DRAFT_04147 at 257.570 kb on + strand, within H281DRAFT_04147 at 257.570 kb on + strand, within H281DRAFT_04147 at 257.570 kb on + strand, within H281DRAFT_04147 at 257.571 kb on - strand, within H281DRAFT_04147 at 257.572 kb on + strand, within H281DRAFT_04147 at 257.904 kb on + strand, within H281DRAFT_04147 at 257.905 kb on - strand, within H281DRAFT_04147 at 258.000 kb on - strand, within H281DRAFT_04147 at 258.330 kb on + strand at 258.390 kb on + strand at 258.397 kb on + strand at 258.415 kb on - strand at 258.688 kb on - strand, within H281DRAFT_04148 at 258.726 kb on - strand, within H281DRAFT_04148 at 259.426 kb on + strand at 259.427 kb on - strand at 260.283 kb on + strand, within H281DRAFT_04149
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 257,568 + H281DRAFT_04147 0.29 -0.4 257,569 - H281DRAFT_04147 0.29 -0.1 257,570 + H281DRAFT_04147 0.29 +1.6 257,570 + H281DRAFT_04147 0.29 +0.6 257,570 + H281DRAFT_04147 0.29 -0.3 257,571 - H281DRAFT_04147 0.29 -1.9 257,572 + H281DRAFT_04147 0.30 -0.8 257,904 + H281DRAFT_04147 0.60 +0.8 257,905 - H281DRAFT_04147 0.60 -0.8 258,000 - H281DRAFT_04147 0.68 -0.4 258,330 + -0.0 258,390 + +0.1 258,397 + +0.9 258,415 - -0.1 258,688 - H281DRAFT_04148 0.30 +0.5 258,726 - H281DRAFT_04148 0.33 +0.3 259,426 + +0.5 259,427 - -1.0 260,283 + H281DRAFT_04149 0.59 -2.3
Or see this region's nucleotide sequence