Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04146 and H281DRAFT_04147 are separated by 46 nucleotides H281DRAFT_04147 and H281DRAFT_04148 are separated by 43 nucleotides
H281DRAFT_04146: H281DRAFT_04146 - xylulokinase, at 255,657 to 257,201
_04146
H281DRAFT_04147: H281DRAFT_04147 - L-iditol 2-dehydrogenase, at 257,248 to 258,345
_04147
H281DRAFT_04148: H281DRAFT_04148 - monosaccharide ABC transporter membrane protein, CUT2 family, at 258,389 to 259,396
_04148
Position (kb) 257
258
259 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 256.307 kb on - strand, within H281DRAFT_04146 at 256.382 kb on - strand, within H281DRAFT_04146 at 256.796 kb on - strand, within H281DRAFT_04146 at 256.826 kb on - strand, within H281DRAFT_04146 at 256.894 kb on - strand, within H281DRAFT_04146 at 256.906 kb on + strand, within H281DRAFT_04146 at 256.919 kb on + strand, within H281DRAFT_04146 at 256.925 kb on + strand, within H281DRAFT_04146 at 257.104 kb on + strand at 257.104 kb on + strand at 257.194 kb on + strand at 257.215 kb on - strand at 257.216 kb on + strand at 257.270 kb on - strand at 257.568 kb on + strand, within H281DRAFT_04147 at 257.569 kb on - strand, within H281DRAFT_04147 at 257.570 kb on + strand, within H281DRAFT_04147 at 257.570 kb on + strand, within H281DRAFT_04147 at 257.570 kb on + strand, within H281DRAFT_04147 at 257.571 kb on - strand, within H281DRAFT_04147 at 257.572 kb on + strand, within H281DRAFT_04147 at 257.904 kb on + strand, within H281DRAFT_04147 at 257.905 kb on - strand, within H281DRAFT_04147 at 258.000 kb on - strand, within H281DRAFT_04147 at 258.330 kb on + strand at 258.390 kb on + strand at 258.397 kb on + strand at 258.415 kb on - strand at 258.688 kb on - strand, within H281DRAFT_04148 at 258.726 kb on - strand, within H281DRAFT_04148
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 256,307 - H281DRAFT_04146 0.42 +1.2 256,382 - H281DRAFT_04146 0.47 +0.2 256,796 - H281DRAFT_04146 0.74 -3.7 256,826 - H281DRAFT_04146 0.76 +0.2 256,894 - H281DRAFT_04146 0.80 -0.1 256,906 + H281DRAFT_04146 0.81 -0.5 256,919 + H281DRAFT_04146 0.82 +2.0 256,925 + H281DRAFT_04146 0.82 -0.4 257,104 + +0.9 257,104 + +0.7 257,194 + +0.4 257,215 - +0.5 257,216 + -3.1 257,270 - +0.9 257,568 + H281DRAFT_04147 0.29 -0.4 257,569 - H281DRAFT_04147 0.29 -0.1 257,570 + H281DRAFT_04147 0.29 +1.6 257,570 + H281DRAFT_04147 0.29 +0.6 257,570 + H281DRAFT_04147 0.29 -0.3 257,571 - H281DRAFT_04147 0.29 -1.9 257,572 + H281DRAFT_04147 0.30 -0.8 257,904 + H281DRAFT_04147 0.60 +0.8 257,905 - H281DRAFT_04147 0.60 -0.8 258,000 - H281DRAFT_04147 0.68 -0.4 258,330 + -0.0 258,390 + +0.1 258,397 + +0.9 258,415 - -0.1 258,688 - H281DRAFT_04148 0.30 +0.5 258,726 - H281DRAFT_04148 0.33 +0.3
Or see this region's nucleotide sequence