Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04139 and H281DRAFT_04140 are separated by 231 nucleotides H281DRAFT_04140 and H281DRAFT_04141 are separated by 41 nucleotides H281DRAFT_04141 and H281DRAFT_04142 are separated by 129 nucleotides H281DRAFT_04142 and H281DRAFT_04143 are separated by 37 nucleotides
H281DRAFT_04139: H281DRAFT_04139 - peptide-methionine (S)-S-oxide reductase, at 249,932 to 250,480
_04139
H281DRAFT_04140: H281DRAFT_04140 - NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family, at 250,712 to 251,245
_04140
H281DRAFT_04141: H281DRAFT_04141 - transcriptional regulator, AsnC family, at 251,287 to 251,802
_04141
H281DRAFT_04142: H281DRAFT_04142 - Kynurenine formamidase, at 251,932 to 252,570
_04142
H281DRAFT_04143: H281DRAFT_04143 - Kynureninase, at 252,608 to 253,858
_04143
Position (kb) 251
252 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 250.347 kb on + strand, within H281DRAFT_04139 at 250.347 kb on + strand, within H281DRAFT_04139 at 250.348 kb on - strand, within H281DRAFT_04139 at 250.348 kb on - strand, within H281DRAFT_04139 at 250.378 kb on - strand, within H281DRAFT_04139 at 250.416 kb on + strand, within H281DRAFT_04139 at 250.416 kb on + strand, within H281DRAFT_04139 at 250.417 kb on - strand, within H281DRAFT_04139 at 250.513 kb on - strand at 250.534 kb on - strand at 250.540 kb on + strand at 250.541 kb on - strand at 250.663 kb on + strand at 250.664 kb on - strand at 250.871 kb on - strand, within H281DRAFT_04140 at 250.871 kb on - strand, within H281DRAFT_04140 at 250.959 kb on - strand, within H281DRAFT_04140 at 250.995 kb on + strand, within H281DRAFT_04140 at 250.995 kb on + strand, within H281DRAFT_04140 at 250.995 kb on + strand, within H281DRAFT_04140 at 250.996 kb on - strand, within H281DRAFT_04140 at 250.996 kb on - strand, within H281DRAFT_04140 at 250.996 kb on - strand, within H281DRAFT_04140 at 250.996 kb on - strand, within H281DRAFT_04140 at 251.040 kb on + strand, within H281DRAFT_04140 at 251.041 kb on - strand, within H281DRAFT_04140 at 251.088 kb on + strand, within H281DRAFT_04140 at 251.244 kb on - strand at 251.413 kb on - strand, within H281DRAFT_04141 at 251.413 kb on - strand, within H281DRAFT_04141 at 251.413 kb on - strand, within H281DRAFT_04141 at 251.414 kb on + strand, within H281DRAFT_04141 at 251.414 kb on + strand, within H281DRAFT_04141 at 251.414 kb on + strand at 251.414 kb on + strand, within H281DRAFT_04141 at 251.414 kb on + strand, within H281DRAFT_04141 at 251.414 kb on + strand, within H281DRAFT_04141 at 251.414 kb on + strand at 251.477 kb on + strand, within H281DRAFT_04141 at 251.478 kb on - strand, within H281DRAFT_04141 at 251.478 kb on - strand, within H281DRAFT_04141 at 251.802 kb on + strand at 251.835 kb on - strand at 251.896 kb on + strand at 251.896 kb on + strand at 251.897 kb on - strand at 251.897 kb on - strand at 251.897 kb on - strand at 251.897 kb on - strand at 251.907 kb on - strand at 252.106 kb on + strand, within H281DRAFT_04142 at 252.137 kb on + strand, within H281DRAFT_04142 at 252.151 kb on + strand, within H281DRAFT_04142 at 252.152 kb on - strand, within H281DRAFT_04142 at 252.252 kb on - strand, within H281DRAFT_04142 at 252.481 kb on + strand, within H281DRAFT_04142 at 252.694 kb on + strand at 252.694 kb on + strand at 252.695 kb on - strand at 252.695 kb on - strand at 252.695 kb on - strand at 252.699 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 250,347 + H281DRAFT_04139 0.76 -0.1 250,347 + H281DRAFT_04139 0.76 +0.9 250,348 - H281DRAFT_04139 0.76 +0.2 250,348 - H281DRAFT_04139 0.76 -0.5 250,378 - H281DRAFT_04139 0.81 +0.2 250,416 + H281DRAFT_04139 0.88 +0.7 250,416 + H281DRAFT_04139 0.88 +1.7 250,417 - H281DRAFT_04139 0.88 -1.9 250,513 - +0.8 250,534 - -0.6 250,540 + +0.7 250,541 - -0.2 250,663 + +0.3 250,664 - -0.7 250,871 - H281DRAFT_04140 0.30 -0.1 250,871 - H281DRAFT_04140 0.30 -1.1 250,959 - H281DRAFT_04140 0.46 +0.2 250,995 + H281DRAFT_04140 0.53 +0.5 250,995 + H281DRAFT_04140 0.53 +0.4 250,995 + H281DRAFT_04140 0.53 -0.2 250,996 - H281DRAFT_04140 0.53 -0.7 250,996 - H281DRAFT_04140 0.53 +0.2 250,996 - H281DRAFT_04140 0.53 +1.2 250,996 - H281DRAFT_04140 0.53 +0.5 251,040 + H281DRAFT_04140 0.61 +1.7 251,041 - H281DRAFT_04140 0.62 +2.2 251,088 + H281DRAFT_04140 0.70 +0.9 251,244 - +0.6 251,413 - H281DRAFT_04141 0.24 +0.3 251,413 - H281DRAFT_04141 0.24 -0.5 251,413 - H281DRAFT_04141 0.24 +0.5 251,414 + H281DRAFT_04141 0.25 +0.1 251,414 + H281DRAFT_04141 0.25 +0.7 251,414 + +0.4 251,414 + H281DRAFT_04141 0.25 -1.3 251,414 + H281DRAFT_04141 0.25 +0.2 251,414 + H281DRAFT_04141 0.25 -1.4 251,414 + +0.9 251,477 + H281DRAFT_04141 0.37 +0.5 251,478 - H281DRAFT_04141 0.37 -0.3 251,478 - H281DRAFT_04141 0.37 -0.3 251,802 + -0.6 251,835 - +0.9 251,896 + +1.3 251,896 + -1.6 251,897 - +0.3 251,897 - -1.3 251,897 - +0.0 251,897 - +1.5 251,907 - -0.5 252,106 + H281DRAFT_04142 0.27 -0.6 252,137 + H281DRAFT_04142 0.32 +1.2 252,151 + H281DRAFT_04142 0.34 -1.8 252,152 - H281DRAFT_04142 0.34 -0.2 252,252 - H281DRAFT_04142 0.50 -0.2 252,481 + H281DRAFT_04142 0.86 +0.8 252,694 + -0.7 252,694 + -1.8 252,695 - -0.1 252,695 - -3.8 252,695 - -0.6 252,699 - +0.4
Or see this region's nucleotide sequence