Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04051 and H281DRAFT_04052 are separated by 218 nucleotides H281DRAFT_04052 and H281DRAFT_04053 are separated by 2 nucleotides H281DRAFT_04053 and H281DRAFT_04054 are separated by 166 nucleotides
H281DRAFT_04051: H281DRAFT_04051 - transcriptional regulator, RpiR family, at 152,356 to 153,294
_04051
H281DRAFT_04052: H281DRAFT_04052 - Predicted arabinose efflux permease, MFS family, at 153,513 to 154,763
_04052
H281DRAFT_04053: H281DRAFT_04053 - ribosomal small subunit pseudouridine synthase A (EC 5.4.99.-), at 154,766 to 155,566
_04053
H281DRAFT_04054: H281DRAFT_04054 - hypothetical protein, at 155,733 to 155,921
_04054
Position (kb) 153
154
155 Strain fitness (log2 ratio) -2
-1
0
1
2 at 152.634 kb on - strand, within H281DRAFT_04051 at 152.748 kb on - strand, within H281DRAFT_04051 at 152.859 kb on - strand, within H281DRAFT_04051 at 153.254 kb on + strand at 153.264 kb on + strand at 153.288 kb on + strand at 153.288 kb on + strand at 153.289 kb on - strand at 153.398 kb on - strand at 153.432 kb on - strand at 153.965 kb on - strand, within H281DRAFT_04052 at 153.965 kb on - strand, within H281DRAFT_04052 at 154.030 kb on + strand, within H281DRAFT_04052 at 154.030 kb on + strand, within H281DRAFT_04052 at 154.031 kb on - strand, within H281DRAFT_04052 at 154.111 kb on - strand, within H281DRAFT_04052 at 154.122 kb on - strand, within H281DRAFT_04052 at 154.235 kb on - strand, within H281DRAFT_04052 at 154.390 kb on + strand, within H281DRAFT_04052 at 154.390 kb on + strand, within H281DRAFT_04052 at 154.698 kb on - strand at 154.841 kb on + strand at 154.841 kb on + strand at 155.045 kb on + strand, within H281DRAFT_04053 at 155.258 kb on + strand, within H281DRAFT_04053 at 155.258 kb on + strand, within H281DRAFT_04053 at 155.258 kb on + strand, within H281DRAFT_04053 at 155.259 kb on - strand, within H281DRAFT_04053 at 155.259 kb on - strand, within H281DRAFT_04053 at 155.323 kb on - strand, within H281DRAFT_04053 at 155.411 kb on + strand, within H281DRAFT_04053 at 155.600 kb on + strand at 155.601 kb on - strand at 155.691 kb on + strand at 155.691 kb on + strand at 155.692 kb on - strand at 155.711 kb on - strand at 155.763 kb on + strand, within H281DRAFT_04054
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 152,634 - H281DRAFT_04051 0.30 +0.8 152,748 - H281DRAFT_04051 0.42 +0.1 152,859 - H281DRAFT_04051 0.54 +0.3 153,254 + -0.2 153,264 + +0.4 153,288 + +0.5 153,288 + +1.3 153,289 - -1.1 153,398 - -0.8 153,432 - +0.8 153,965 - H281DRAFT_04052 0.36 +2.1 153,965 - H281DRAFT_04052 0.36 +0.1 154,030 + H281DRAFT_04052 0.41 +1.8 154,030 + H281DRAFT_04052 0.41 -1.6 154,031 - H281DRAFT_04052 0.41 +1.6 154,111 - H281DRAFT_04052 0.48 -0.6 154,122 - H281DRAFT_04052 0.49 +1.2 154,235 - H281DRAFT_04052 0.58 -1.9 154,390 + H281DRAFT_04052 0.70 -0.1 154,390 + H281DRAFT_04052 0.70 +0.1 154,698 - +0.2 154,841 + -1.1 154,841 + +0.9 155,045 + H281DRAFT_04053 0.35 +0.3 155,258 + H281DRAFT_04053 0.61 +1.1 155,258 + H281DRAFT_04053 0.61 -0.3 155,258 + H281DRAFT_04053 0.61 -0.1 155,259 - H281DRAFT_04053 0.62 +1.0 155,259 - H281DRAFT_04053 0.62 -0.7 155,323 - H281DRAFT_04053 0.70 +0.3 155,411 + H281DRAFT_04053 0.81 -0.6 155,600 + +1.9 155,601 - +0.5 155,691 + -1.4 155,691 + -1.0 155,692 - +0.5 155,711 - +0.3 155,763 + H281DRAFT_04054 0.16 -0.5
Or see this region's nucleotide sequence