Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03988 and H281DRAFT_03989 are separated by 201 nucleotides H281DRAFT_03989 and H281DRAFT_03990 overlap by 26 nucleotides H281DRAFT_03990 and H281DRAFT_03991 are separated by 131 nucleotides
H281DRAFT_03988: H281DRAFT_03988 - alanyl aminopeptidase. Metallo peptidase. MEROPS family M01, at 94,204 to 96,978
_03988
H281DRAFT_03989: H281DRAFT_03989 - proteic killer suppression protein, at 97,180 to 97,461
_03989
H281DRAFT_03990: H281DRAFT_03990 - addiction module antidote protein, HigA family, at 97,436 to 97,933
_03990
H281DRAFT_03991: H281DRAFT_03991 - D-fructose 1,6-bisphosphatase, at 98,065 to 99,081
_03991
Position (kb) 97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 96.208 kb on + strand, within H281DRAFT_03988 at 96.209 kb on - strand, within H281DRAFT_03988 at 96.209 kb on - strand, within H281DRAFT_03988 at 96.269 kb on + strand, within H281DRAFT_03988 at 96.270 kb on - strand, within H281DRAFT_03988 at 96.400 kb on + strand, within H281DRAFT_03988 at 96.662 kb on + strand, within H281DRAFT_03988 at 96.781 kb on + strand at 97.128 kb on + strand at 97.240 kb on - strand, within H281DRAFT_03989 at 97.240 kb on - strand, within H281DRAFT_03989 at 97.463 kb on + strand at 97.464 kb on - strand at 97.709 kb on + strand, within H281DRAFT_03990 at 97.754 kb on + strand, within H281DRAFT_03990 at 97.754 kb on + strand, within H281DRAFT_03990
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 96,208 + H281DRAFT_03988 0.72 +1.2 96,209 - H281DRAFT_03988 0.72 +0.0 96,209 - H281DRAFT_03988 0.72 +0.4 96,269 + H281DRAFT_03988 0.74 -0.9 96,270 - H281DRAFT_03988 0.74 -1.0 96,400 + H281DRAFT_03988 0.79 -2.8 96,662 + H281DRAFT_03988 0.89 -0.5 96,781 + -1.7 97,128 + +0.6 97,240 - H281DRAFT_03989 0.21 +1.1 97,240 - H281DRAFT_03989 0.21 +0.1 97,463 + +1.2 97,464 - -1.2 97,709 + H281DRAFT_03990 0.55 -1.5 97,754 + H281DRAFT_03990 0.64 -0.6 97,754 + H281DRAFT_03990 0.64 +0.6
Or see this region's nucleotide sequence