Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03782 and H281DRAFT_03783 overlap by 4 nucleotides H281DRAFT_03783 and H281DRAFT_03784 are separated by 42 nucleotides H281DRAFT_03784 and H281DRAFT_03785 are separated by 5 nucleotides
H281DRAFT_03782: H281DRAFT_03782 - bacteriocin-processing peptidase. Cysteine peptidase. MEROPS family C39, at 302,237 to 305,296
_03782
H281DRAFT_03783: H281DRAFT_03783 - Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains, at 305,293 to 306,663
_03783
H281DRAFT_03784: H281DRAFT_03784 - protein phosphatase, at 306,706 to 307,476
_03784
H281DRAFT_03785: H281DRAFT_03785 - hypothetical protein, at 307,482 to 307,769
_03785
Position (kb) 305
306
307 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 304.724 kb on + strand at 305.052 kb on + strand at 305.258 kb on + strand at 305.262 kb on - strand at 305.475 kb on + strand, within H281DRAFT_03783 at 305.841 kb on + strand, within H281DRAFT_03783 at 306.189 kb on - strand, within H281DRAFT_03783 at 306.657 kb on + strand at 306.657 kb on + strand at 306.662 kb on - strand at 306.774 kb on + strand at 306.860 kb on - strand, within H281DRAFT_03784 at 307.129 kb on + strand, within H281DRAFT_03784 at 307.129 kb on + strand, within H281DRAFT_03784 at 307.130 kb on - strand, within H281DRAFT_03784 at 307.133 kb on + strand, within H281DRAFT_03784 at 307.483 kb on + strand at 307.544 kb on + strand, within H281DRAFT_03785 at 307.545 kb on - strand, within H281DRAFT_03785 at 307.654 kb on + strand, within H281DRAFT_03785 at 307.655 kb on - strand, within H281DRAFT_03785 at 307.655 kb on - strand, within H281DRAFT_03785
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 304,724 + +1.1 305,052 + +0.4 305,258 + -0.3 305,262 - +0.1 305,475 + H281DRAFT_03783 0.13 +0.1 305,841 + H281DRAFT_03783 0.40 +0.8 306,189 - H281DRAFT_03783 0.65 +3.1 306,657 + +0.7 306,657 + -2.1 306,662 - +1.1 306,774 + -0.6 306,860 - H281DRAFT_03784 0.20 +0.1 307,129 + H281DRAFT_03784 0.55 +0.0 307,129 + H281DRAFT_03784 0.55 +0.9 307,130 - H281DRAFT_03784 0.55 +0.7 307,133 + H281DRAFT_03784 0.55 +1.2 307,483 + -0.2 307,544 + H281DRAFT_03785 0.22 -0.7 307,545 - H281DRAFT_03785 0.22 +0.1 307,654 + H281DRAFT_03785 0.60 +0.4 307,655 - H281DRAFT_03785 0.60 +0.4 307,655 - H281DRAFT_03785 0.60 -2.2
Or see this region's nucleotide sequence