Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03710 and H281DRAFT_03711 are separated by 2 nucleotides H281DRAFT_03711 and H281DRAFT_03712 are separated by 313 nucleotides
H281DRAFT_03710: H281DRAFT_03710 - Nitrate/nitrite transporter NarK, at 224,513 to 225,820
_03710
H281DRAFT_03711: H281DRAFT_03711 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 225,823 to 226,953
_03711
H281DRAFT_03712: H281DRAFT_03712 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 227,267 to 228,058
_03712
Position (kb) 225
226
227 Strain fitness (log2 ratio) -2
-1
0
1
2 at 225.115 kb on - strand, within H281DRAFT_03710 at 225.115 kb on - strand, within H281DRAFT_03710 at 225.490 kb on + strand, within H281DRAFT_03710 at 225.491 kb on - strand, within H281DRAFT_03710 at 225.514 kb on - strand, within H281DRAFT_03710 at 225.695 kb on + strand at 225.695 kb on + strand at 225.695 kb on + strand at 225.790 kb on - strand at 225.797 kb on + strand at 225.955 kb on + strand, within H281DRAFT_03711 at 225.956 kb on - strand, within H281DRAFT_03711 at 226.082 kb on - strand, within H281DRAFT_03711 at 226.113 kb on + strand, within H281DRAFT_03711 at 226.196 kb on - strand, within H281DRAFT_03711 at 226.196 kb on - strand, within H281DRAFT_03711 at 226.196 kb on - strand, within H281DRAFT_03711 at 226.472 kb on - strand, within H281DRAFT_03711 at 226.509 kb on - strand at 226.509 kb on - strand, within H281DRAFT_03711 at 226.510 kb on + strand, within H281DRAFT_03711 at 226.511 kb on - strand, within H281DRAFT_03711 at 226.660 kb on + strand, within H281DRAFT_03711 at 226.770 kb on + strand, within H281DRAFT_03711 at 226.771 kb on - strand, within H281DRAFT_03711 at 226.771 kb on - strand, within H281DRAFT_03711 at 226.771 kb on - strand, within H281DRAFT_03711 at 226.771 kb on - strand, within H281DRAFT_03711 at 227.283 kb on - strand at 227.346 kb on + strand at 227.347 kb on - strand, within H281DRAFT_03712
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 225,115 - H281DRAFT_03710 0.46 -0.1 225,115 - H281DRAFT_03710 0.46 +1.1 225,490 + H281DRAFT_03710 0.75 +1.3 225,491 - H281DRAFT_03710 0.75 -1.3 225,514 - H281DRAFT_03710 0.77 +0.2 225,695 + +2.7 225,695 + +0.3 225,695 + -0.6 225,790 - -0.4 225,797 + -0.2 225,955 + H281DRAFT_03711 0.12 -0.6 225,956 - H281DRAFT_03711 0.12 -1.8 226,082 - H281DRAFT_03711 0.23 -0.4 226,113 + H281DRAFT_03711 0.26 -0.2 226,196 - H281DRAFT_03711 0.33 +1.3 226,196 - H281DRAFT_03711 0.33 -1.4 226,196 - H281DRAFT_03711 0.33 -1.0 226,472 - H281DRAFT_03711 0.57 -1.6 226,509 - +1.1 226,509 - H281DRAFT_03711 0.61 -0.4 226,510 + H281DRAFT_03711 0.61 +0.7 226,511 - H281DRAFT_03711 0.61 +1.1 226,660 + H281DRAFT_03711 0.74 -1.0 226,770 + H281DRAFT_03711 0.84 +2.0 226,771 - H281DRAFT_03711 0.84 -1.1 226,771 - H281DRAFT_03711 0.84 -1.1 226,771 - H281DRAFT_03711 0.84 -0.0 226,771 - H281DRAFT_03711 0.84 -1.2 227,283 - -0.6 227,346 + +0.6 227,347 - H281DRAFT_03712 0.10 +1.2
Or see this region's nucleotide sequence