Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03610 and H281DRAFT_03611 are separated by 3 nucleotides H281DRAFT_03611 and H281DRAFT_03612 are separated by 46 nucleotides H281DRAFT_03612 and H281DRAFT_03613 are separated by 2 nucleotides
H281DRAFT_03610: H281DRAFT_03610 - squalene-hopene/tetraprenyl-beta-curcumene cyclase, at 118,918 to 120,978
_03610
H281DRAFT_03611: H281DRAFT_03611 - hopanoid-associated phosphorylase, at 120,982 to 121,710
_03611
H281DRAFT_03612: H281DRAFT_03612 - phospholipid-binding lipoprotein MlaA, at 121,757 to 122,827
_03612
H281DRAFT_03613: H281DRAFT_03613 - hypothetical protein, at 122,830 to 125,445
_03613
Position (kb) 121
122
123 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 120.797 kb on - strand at 120.976 kb on + strand at 120.977 kb on - strand at 120.977 kb on - strand at 121.100 kb on - strand, within H281DRAFT_03611 at 121.206 kb on - strand, within H281DRAFT_03611 at 121.510 kb on - strand at 121.510 kb on - strand, within H281DRAFT_03611 at 121.759 kb on - strand at 121.759 kb on - strand at 121.759 kb on - strand at 121.759 kb on - strand at 121.793 kb on - strand at 121.793 kb on - strand at 121.888 kb on + strand, within H281DRAFT_03612 at 122.047 kb on - strand, within H281DRAFT_03612 at 122.189 kb on - strand, within H281DRAFT_03612 at 122.190 kb on + strand, within H281DRAFT_03612 at 122.190 kb on + strand, within H281DRAFT_03612 at 122.191 kb on - strand, within H281DRAFT_03612 at 122.191 kb on - strand, within H281DRAFT_03612 at 122.211 kb on + strand, within H281DRAFT_03612 at 122.211 kb on + strand, within H281DRAFT_03612 at 122.211 kb on + strand, within H281DRAFT_03612 at 122.215 kb on + strand, within H281DRAFT_03612 at 122.319 kb on + strand, within H281DRAFT_03612 at 122.319 kb on + strand, within H281DRAFT_03612 at 122.320 kb on - strand, within H281DRAFT_03612 at 122.320 kb on - strand, within H281DRAFT_03612 at 122.320 kb on - strand, within H281DRAFT_03612 at 122.320 kb on - strand, within H281DRAFT_03612 at 122.320 kb on - strand, within H281DRAFT_03612 at 122.404 kb on - strand, within H281DRAFT_03612 at 122.658 kb on + strand, within H281DRAFT_03612 at 122.686 kb on - strand, within H281DRAFT_03612 at 122.816 kb on - strand at 122.816 kb on - strand at 122.831 kb on + strand at 122.831 kb on + strand at 122.832 kb on - strand at 122.832 kb on - strand at 122.832 kb on - strand at 122.832 kb on - strand at 122.834 kb on - strand at 122.834 kb on - strand at 122.834 kb on - strand at 122.834 kb on - strand at 123.080 kb on + strand at 123.081 kb on - strand at 123.129 kb on + strand, within H281DRAFT_03613 at 123.130 kb on - strand at 123.309 kb on + strand, within H281DRAFT_03613
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 120,797 - -1.5 120,976 + -2.3 120,977 - -0.4 120,977 - +0.1 121,100 - H281DRAFT_03611 0.16 +1.7 121,206 - H281DRAFT_03611 0.31 +1.7 121,510 - +1.1 121,510 - H281DRAFT_03611 0.72 -1.1 121,759 - +1.1 121,759 - +0.6 121,759 - -0.5 121,759 - -1.2 121,793 - +0.1 121,793 - -0.3 121,888 + H281DRAFT_03612 0.12 -0.3 122,047 - H281DRAFT_03612 0.27 -1.1 122,189 - H281DRAFT_03612 0.40 +0.0 122,190 + H281DRAFT_03612 0.40 -0.6 122,190 + H281DRAFT_03612 0.40 +0.1 122,191 - H281DRAFT_03612 0.41 -0.5 122,191 - H281DRAFT_03612 0.41 +2.9 122,211 + H281DRAFT_03612 0.42 -0.1 122,211 + H281DRAFT_03612 0.42 -2.1 122,211 + H281DRAFT_03612 0.42 -4.0 122,215 + H281DRAFT_03612 0.43 -0.7 122,319 + H281DRAFT_03612 0.52 +0.3 122,319 + H281DRAFT_03612 0.52 -1.2 122,320 - H281DRAFT_03612 0.53 -1.3 122,320 - H281DRAFT_03612 0.53 -0.1 122,320 - H281DRAFT_03612 0.53 -1.3 122,320 - H281DRAFT_03612 0.53 -1.1 122,320 - H281DRAFT_03612 0.53 +0.1 122,404 - H281DRAFT_03612 0.60 -0.2 122,658 + H281DRAFT_03612 0.84 -2.6 122,686 - H281DRAFT_03612 0.87 +1.5 122,816 - -3.7 122,816 - -0.5 122,831 + -0.4 122,831 + -0.0 122,832 - -0.4 122,832 - +1.0 122,832 - -0.0 122,832 - -2.4 122,834 - -0.7 122,834 - -0.8 122,834 - -0.3 122,834 - -0.2 123,080 + -2.3 123,081 - -1.2 123,129 + H281DRAFT_03613 0.11 -0.9 123,130 - +0.1 123,309 + H281DRAFT_03613 0.18 +0.9
Or see this region's nucleotide sequence