Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03492 and H281DRAFT_03493 are separated by 169 nucleotides H281DRAFT_03493 and H281DRAFT_03494 are separated by 284 nucleotides H281DRAFT_03494 and H281DRAFT_03495 are separated by 35 nucleotides
H281DRAFT_03492: H281DRAFT_03492 - transcriptional regulator, AraC family with amidase-like domain, at 577,044 to 578,180
_03492
H281DRAFT_03493: H281DRAFT_03493 - TIGR03118 family protein, at 578,350 to 579,522
_03493
H281DRAFT_03494: H281DRAFT_03494 - Alkylhydroperoxidase family enzyme, contains CxxC motif, at 579,807 to 580,364
_03494
H281DRAFT_03495: H281DRAFT_03495 - transcriptional regulator, XRE family, at 580,400 to 581,245
_03495
Position (kb) 578
579
580 Strain fitness (log2 ratio) -2
-1
0
1 at 577.463 kb on + strand, within H281DRAFT_03492 at 577.797 kb on - strand, within H281DRAFT_03492 at 577.803 kb on - strand, within H281DRAFT_03492 at 577.883 kb on + strand, within H281DRAFT_03492 at 577.904 kb on - strand, within H281DRAFT_03492 at 577.971 kb on - strand, within H281DRAFT_03492 at 577.971 kb on - strand, within H281DRAFT_03492 at 578.493 kb on + strand, within H281DRAFT_03493 at 578.695 kb on - strand, within H281DRAFT_03493 at 578.898 kb on + strand, within H281DRAFT_03493 at 578.958 kb on + strand, within H281DRAFT_03493 at 579.020 kb on + strand, within H281DRAFT_03493 at 579.048 kb on - strand, within H281DRAFT_03493 at 579.622 kb on - strand at 579.622 kb on - strand at 579.641 kb on - strand at 579.727 kb on - strand at 579.752 kb on + strand at 579.825 kb on + strand at 579.826 kb on - strand at 580.367 kb on + strand at 580.380 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 577,463 + H281DRAFT_03492 0.37 -1.4 577,797 - H281DRAFT_03492 0.66 -0.1 577,803 - H281DRAFT_03492 0.67 +0.1 577,883 + H281DRAFT_03492 0.74 +1.3 577,904 - H281DRAFT_03492 0.76 +0.2 577,971 - H281DRAFT_03492 0.82 -1.6 577,971 - H281DRAFT_03492 0.82 -2.7 578,493 + H281DRAFT_03493 0.12 +1.6 578,695 - H281DRAFT_03493 0.29 +1.1 578,898 + H281DRAFT_03493 0.47 -0.0 578,958 + H281DRAFT_03493 0.52 +0.1 579,020 + H281DRAFT_03493 0.57 -0.9 579,048 - H281DRAFT_03493 0.60 +0.9 579,622 - +0.0 579,622 - -0.5 579,641 - -0.1 579,727 - -0.7 579,752 + -2.1 579,825 + +0.5 579,826 - +0.1 580,367 + -0.6 580,380 - +0.1
Or see this region's nucleotide sequence