Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03336 and H281DRAFT_03337 are separated by 40 nucleotides H281DRAFT_03337 and H281DRAFT_03338 are separated by 54 nucleotides H281DRAFT_03338 and H281DRAFT_03339 are separated by 214 nucleotides
H281DRAFT_03336: H281DRAFT_03336 - Na+/H+-dicarboxylate symporter, at 393,244 to 394,560
_03336
H281DRAFT_03337: H281DRAFT_03337 - molybdate transport system substrate-binding protein, at 394,601 to 395,383
_03337
H281DRAFT_03338: H281DRAFT_03338 - MFS transporter, MHS family, citrate/tricarballylate:H+ symporter, at 395,438 to 396,736
_03338
H281DRAFT_03339: H281DRAFT_03339 - transcriptional regulator, LysR family, at 396,951 to 397,838
_03339
Position (kb) 395
396
397 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 394.668 kb on + strand at 394.933 kb on - strand, within H281DRAFT_03337 at 395.390 kb on - strand at 395.617 kb on - strand, within H281DRAFT_03338 at 395.700 kb on + strand, within H281DRAFT_03338 at 395.896 kb on + strand, within H281DRAFT_03338 at 395.897 kb on - strand, within H281DRAFT_03338 at 396.017 kb on + strand, within H281DRAFT_03338 at 396.498 kb on + strand, within H281DRAFT_03338 at 396.625 kb on - strand at 396.719 kb on - strand at 397.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 394,668 + +1.5 394,933 - H281DRAFT_03337 0.42 -1.1 395,390 - +0.8 395,617 - H281DRAFT_03338 0.14 -3.0 395,700 + H281DRAFT_03338 0.20 -1.1 395,896 + H281DRAFT_03338 0.35 +1.0 395,897 - H281DRAFT_03338 0.35 +1.3 396,017 + H281DRAFT_03338 0.45 +0.1 396,498 + H281DRAFT_03338 0.82 -1.3 396,625 - -0.2 396,719 - +0.4 397,004 - -0.2
Or see this region's nucleotide sequence