Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03334

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03333 and H281DRAFT_03334 are separated by 93 nucleotidesH281DRAFT_03334 and H281DRAFT_03335 are separated by 231 nucleotides H281DRAFT_03333: H281DRAFT_03333 - hypothetical protein, at 390,602 to 391,663 _03333 H281DRAFT_03334: H281DRAFT_03334 - transcriptional regulator, ArsR family, at 391,757 to 392,047 _03334 H281DRAFT_03335: H281DRAFT_03335 - transcriptional regulator, LysR family, at 392,279 to 393,247 _03335 Position (kb) 391 392 393Strain fitness (log2 ratio) -3 -2 -1 0 1at 390.820 kb on - strand, within H281DRAFT_03333at 390.992 kb on + strand, within H281DRAFT_03333at 390.992 kb on + strand, within H281DRAFT_03333at 391.080 kb on + strand, within H281DRAFT_03333at 391.081 kb on - strand, within H281DRAFT_03333at 391.081 kb on - strand, within H281DRAFT_03333at 391.467 kb on + strand, within H281DRAFT_03333at 391.537 kb on - strand, within H281DRAFT_03333at 391.540 kb on - strand, within H281DRAFT_03333at 391.934 kb on + strand, within H281DRAFT_03334at 392.142 kb on + strandat 392.218 kb on - strandat 392.861 kb on + strand, within H281DRAFT_03335at 392.862 kb on - strand, within H281DRAFT_03335

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
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390,820 - H281DRAFT_03333 0.21 -0.3
390,992 + H281DRAFT_03333 0.37 +0.5
390,992 + H281DRAFT_03333 0.37 -3.0
391,080 + H281DRAFT_03333 0.45 -0.4
391,081 - H281DRAFT_03333 0.45 -0.9
391,081 - H281DRAFT_03333 0.45 +0.3
391,467 + H281DRAFT_03333 0.81 +0.3
391,537 - H281DRAFT_03333 0.88 -0.1
391,540 - H281DRAFT_03333 0.88 -0.6
391,934 + H281DRAFT_03334 0.61 -2.3
392,142 + -1.1
392,218 - +0.3
392,861 + H281DRAFT_03335 0.60 +0.6
392,862 - H281DRAFT_03335 0.60 -1.7

Or see this region's nucleotide sequence