Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03326 and H281DRAFT_03327 are separated by 214 nucleotides H281DRAFT_03327 and H281DRAFT_03328 are separated by 153 nucleotides H281DRAFT_03328 and H281DRAFT_03329 are separated by 199 nucleotides H281DRAFT_03329 and H281DRAFT_03330 are separated by 78 nucleotides
H281DRAFT_03326: H281DRAFT_03326 - PAS domain S-box-containing protein, at 384,857 to 387,025
_03326
H281DRAFT_03327: H281DRAFT_03327 - Protein of unknown function (DUF2795), at 387,240 to 387,461
_03327
H281DRAFT_03328: H281DRAFT_03328 - hypothetical protein, at 387,615 to 388,034
_03328
H281DRAFT_03329: H281DRAFT_03329 - hypothetical protein, at 388,234 to 388,491
_03329
H281DRAFT_03330: H281DRAFT_03330 - Uncharacterized conserved protein PhnB, glyoxalase superfamily, at 388,570 to 389,031
_03330
Position (kb) 387
388
389 Strain fitness (log2 ratio) -1
0
1 at 387.129 kb on - strand at 387.129 kb on - strand at 387.138 kb on - strand at 387.539 kb on + strand at 387.540 kb on - strand at 387.788 kb on - strand, within H281DRAFT_03328 at 387.801 kb on + strand, within H281DRAFT_03328 at 387.802 kb on - strand, within H281DRAFT_03328 at 388.490 kb on - strand at 388.801 kb on - strand, within H281DRAFT_03330
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 387,129 - +0.6 387,129 - -1.6 387,138 - +1.3 387,539 + +0.8 387,540 - +0.5 387,788 - H281DRAFT_03328 0.41 -0.0 387,801 + H281DRAFT_03328 0.44 -0.4 387,802 - H281DRAFT_03328 0.45 -0.3 388,490 - +0.3 388,801 - H281DRAFT_03330 0.50 +0.2
Or see this region's nucleotide sequence