Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03299 and H281DRAFT_03300 overlap by 17 nucleotides H281DRAFT_03300 and H281DRAFT_03301 are separated by 249 nucleotides
H281DRAFT_03299: H281DRAFT_03299 - cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein, at 359,519 to 360,532
_03299
H281DRAFT_03300: H281DRAFT_03300 - cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein, at 360,516 to 361,964
_03300
H281DRAFT_03301: H281DRAFT_03301 - oxidoreductase alpha (molybdopterin) subunit, at 362,214 to 364,520
_03301
Position (kb) 360
361
362 Strain fitness (log2 ratio) -1
0
1 at 359.566 kb on - strand at 359.571 kb on + strand at 360.014 kb on - strand, within H281DRAFT_03299 at 360.059 kb on - strand, within H281DRAFT_03299 at 360.800 kb on - strand, within H281DRAFT_03300 at 361.056 kb on - strand, within H281DRAFT_03300 at 361.862 kb on - strand at 361.862 kb on - strand at 362.043 kb on - strand at 362.360 kb on + strand at 362.436 kb on - strand at 362.697 kb on + strand, within H281DRAFT_03301 at 362.698 kb on - strand, within H281DRAFT_03301 at 362.724 kb on + strand, within H281DRAFT_03301
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 359,566 - +1.0 359,571 + +1.0 360,014 - H281DRAFT_03299 0.49 +1.2 360,059 - H281DRAFT_03299 0.53 -0.5 360,800 - H281DRAFT_03300 0.20 -0.4 361,056 - H281DRAFT_03300 0.37 -0.5 361,862 - -0.5 361,862 - -1.5 362,043 - -0.7 362,360 + +0.9 362,436 - +0.6 362,697 + H281DRAFT_03301 0.21 -1.7 362,698 - H281DRAFT_03301 0.21 -0.7 362,724 + H281DRAFT_03301 0.22 +0.2
Or see this region's nucleotide sequence