Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03278 and H281DRAFT_03279 are separated by 124 nucleotides H281DRAFT_03279 and H281DRAFT_03280 overlap by 22 nucleotides
H281DRAFT_03278: H281DRAFT_03278 - Threonine dehydrogenase, at 334,060 to 335,268
_03278
H281DRAFT_03279: H281DRAFT_03279 - ATP-dependent DNA helicase RecQ, at 335,393 to 337,114
_03279
H281DRAFT_03280: H281DRAFT_03280 - UDP-glucuronate decarboxylase, at 337,093 to 338,112
_03280
Position (kb) 335
336
337
338 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 335.467 kb on - strand at 335.467 kb on - strand at 335.790 kb on + strand, within H281DRAFT_03279 at 335.791 kb on - strand, within H281DRAFT_03279 at 335.791 kb on - strand, within H281DRAFT_03279 at 335.990 kb on + strand, within H281DRAFT_03279 at 336.315 kb on + strand, within H281DRAFT_03279 at 336.316 kb on - strand, within H281DRAFT_03279 at 336.360 kb on - strand, within H281DRAFT_03279 at 336.360 kb on - strand, within H281DRAFT_03279 at 336.360 kb on - strand, within H281DRAFT_03279 at 337.457 kb on + strand, within H281DRAFT_03280 at 337.574 kb on + strand, within H281DRAFT_03280 at 337.707 kb on - strand, within H281DRAFT_03280 at 337.743 kb on - strand, within H281DRAFT_03280 at 337.857 kb on - strand, within H281DRAFT_03280 at 337.888 kb on - strand, within H281DRAFT_03280 at 338.101 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 335,467 - +0.9 335,467 - -0.3 335,790 + H281DRAFT_03279 0.23 +1.1 335,791 - H281DRAFT_03279 0.23 +0.1 335,791 - H281DRAFT_03279 0.23 +0.1 335,990 + H281DRAFT_03279 0.35 +0.5 336,315 + H281DRAFT_03279 0.54 +0.2 336,316 - H281DRAFT_03279 0.54 +0.7 336,360 - H281DRAFT_03279 0.56 +1.0 336,360 - H281DRAFT_03279 0.56 +0.5 336,360 - H281DRAFT_03279 0.56 +0.5 337,457 + H281DRAFT_03280 0.36 -2.9 337,574 + H281DRAFT_03280 0.47 -0.5 337,707 - H281DRAFT_03280 0.60 -0.5 337,743 - H281DRAFT_03280 0.64 +0.9 337,857 - H281DRAFT_03280 0.75 +0.3 337,888 - H281DRAFT_03280 0.78 +0.5 338,101 - +0.3
Or see this region's nucleotide sequence