Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03038 and H281DRAFT_03039 overlap by 4 nucleotides H281DRAFT_03039 and H281DRAFT_03040 are separated by 283 nucleotides
H281DRAFT_03038: H281DRAFT_03038 - chemotaxis protein MotB, at 68,220 to 69,206
_03038
H281DRAFT_03039: H281DRAFT_03039 - chemotaxis protein MotA, at 69,203 to 70,090
_03039
H281DRAFT_03040: H281DRAFT_03040 - Uncharacterized conserved protein, DUF2252 family, at 70,374 to 71,786
_03040
Position (kb) 69
70
71 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 68.229 kb on + strand at 68.418 kb on + strand, within H281DRAFT_03038 at 68.419 kb on - strand, within H281DRAFT_03038 at 68.419 kb on - strand, within H281DRAFT_03038 at 68.548 kb on + strand, within H281DRAFT_03038 at 68.548 kb on + strand at 68.638 kb on + strand, within H281DRAFT_03038 at 68.639 kb on - strand, within H281DRAFT_03038 at 68.996 kb on - strand, within H281DRAFT_03038 at 69.088 kb on + strand, within H281DRAFT_03038 at 69.089 kb on - strand, within H281DRAFT_03038 at 69.337 kb on - strand, within H281DRAFT_03039 at 69.663 kb on - strand, within H281DRAFT_03039 at 69.706 kb on - strand, within H281DRAFT_03039 at 69.844 kb on - strand, within H281DRAFT_03039 at 69.986 kb on + strand, within H281DRAFT_03039 at 69.987 kb on - strand, within H281DRAFT_03039 at 70.177 kb on + strand at 70.236 kb on + strand at 70.308 kb on + strand at 70.309 kb on - strand at 70.309 kb on - strand at 70.373 kb on + strand at 70.448 kb on + strand at 70.487 kb on + strand at 70.490 kb on + strand at 70.490 kb on + strand at 70.536 kb on + strand, within H281DRAFT_03040 at 70.604 kb on - strand, within H281DRAFT_03040 at 70.604 kb on - strand, within H281DRAFT_03040 at 70.604 kb on - strand, within H281DRAFT_03040 at 70.870 kb on - strand, within H281DRAFT_03040
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 68,229 + -0.1 68,418 + H281DRAFT_03038 0.20 +1.1 68,419 - H281DRAFT_03038 0.20 +3.9 68,419 - H281DRAFT_03038 0.20 -0.3 68,548 + H281DRAFT_03038 0.33 +0.6 68,548 + +1.9 68,638 + H281DRAFT_03038 0.42 -0.3 68,639 - H281DRAFT_03038 0.42 -0.2 68,996 - H281DRAFT_03038 0.79 +0.2 69,088 + H281DRAFT_03038 0.88 +0.2 69,089 - H281DRAFT_03038 0.88 -0.0 69,337 - H281DRAFT_03039 0.15 -0.2 69,663 - H281DRAFT_03039 0.52 -0.7 69,706 - H281DRAFT_03039 0.57 +0.4 69,844 - H281DRAFT_03039 0.72 -0.1 69,986 + H281DRAFT_03039 0.88 -0.5 69,987 - H281DRAFT_03039 0.88 -0.8 70,177 + -0.4 70,236 + -0.4 70,308 + +0.5 70,309 - +1.1 70,309 - -0.1 70,373 + +0.0 70,448 + -0.6 70,487 + -1.5 70,490 + +0.8 70,490 + +0.2 70,536 + H281DRAFT_03040 0.11 +1.4 70,604 - H281DRAFT_03040 0.16 -1.7 70,604 - H281DRAFT_03040 0.16 -0.1 70,604 - H281DRAFT_03040 0.16 -1.8 70,870 - H281DRAFT_03040 0.35 +0.6
Or see this region's nucleotide sequence