Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03013

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03011 and H281DRAFT_03012 are separated by 104 nucleotidesH281DRAFT_03012 and H281DRAFT_03013 are separated by 96 nucleotidesH281DRAFT_03013 and H281DRAFT_03014 are separated by 364 nucleotides H281DRAFT_03011: H281DRAFT_03011 - NAD(P) transhydrogenase subunit beta, at 38,545 to 39,579 _03011 H281DRAFT_03012: H281DRAFT_03012 - hypothetical protein, at 39,684 to 39,989 _03012 H281DRAFT_03013: H281DRAFT_03013 - transcriptional regulator, LysR family, at 40,086 to 41,033 _03013 H281DRAFT_03014: H281DRAFT_03014 - MFS transporter, OFA family, oxalate/formate antiporter, at 41,398 to 42,744 _03014 Position (kb) 40 41 42Strain fitness (log2 ratio) -1 0 1 2at 39.170 kb on + strand, within H281DRAFT_03011at 39.171 kb on - strand, within H281DRAFT_03011at 39.264 kb on - strand, within H281DRAFT_03011at 39.292 kb on + strand, within H281DRAFT_03011at 39.472 kb on + strand, within H281DRAFT_03011at 39.473 kb on - strand, within H281DRAFT_03011at 39.615 kb on + strandat 39.616 kb on - strandat 39.716 kb on - strandat 39.764 kb on - strand, within H281DRAFT_03012at 39.764 kb on - strand, within H281DRAFT_03012at 39.797 kb on + strand, within H281DRAFT_03012at 39.902 kb on - strand, within H281DRAFT_03012at 39.902 kb on - strand, within H281DRAFT_03012at 40.034 kb on + strandat 40.035 kb on - strandat 40.035 kb on - strandat 40.217 kb on - strand, within H281DRAFT_03013at 40.217 kb on - strand, within H281DRAFT_03013at 40.292 kb on + strand, within H281DRAFT_03013at 40.443 kb on + strand, within H281DRAFT_03013at 40.444 kb on - strand, within H281DRAFT_03013at 40.509 kb on - strand, within H281DRAFT_03013at 40.528 kb on + strand, within H281DRAFT_03013at 40.711 kb on + strand, within H281DRAFT_03013at 40.712 kb on - strand, within H281DRAFT_03013at 40.820 kb on - strand, within H281DRAFT_03013at 40.852 kb on + strand, within H281DRAFT_03013at 40.853 kb on - strand, within H281DRAFT_03013at 40.995 kb on + strandat 41.045 kb on - strandat 41.225 kb on + strandat 41.326 kb on + strandat 41.346 kb on + strandat 41.347 kb on - strandat 41.374 kb on + strandat 41.378 kb on + strandat 41.504 kb on - strandat 41.504 kb on - strandat 41.728 kb on + strand, within H281DRAFT_03014at 41.729 kb on - strand, within H281DRAFT_03014

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
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39,170 + H281DRAFT_03011 0.60 +1.6
39,171 - H281DRAFT_03011 0.60 +0.3
39,264 - H281DRAFT_03011 0.69 +0.4
39,292 + H281DRAFT_03011 0.72 +0.8
39,472 + H281DRAFT_03011 0.90 -0.3
39,473 - H281DRAFT_03011 0.90 +0.8
39,615 + +1.2
39,616 - -0.1
39,716 - +1.9
39,764 - H281DRAFT_03012 0.26 +0.8
39,764 - H281DRAFT_03012 0.26 +0.5
39,797 + H281DRAFT_03012 0.37 -0.2
39,902 - H281DRAFT_03012 0.71 -0.6
39,902 - H281DRAFT_03012 0.71 +0.6
40,034 + +0.7
40,035 - +0.0
40,035 - -0.5
40,217 - H281DRAFT_03013 0.14 +0.6
40,217 - H281DRAFT_03013 0.14 -0.5
40,292 + H281DRAFT_03013 0.22 +0.8
40,443 + H281DRAFT_03013 0.38 -1.4
40,444 - H281DRAFT_03013 0.38 -0.4
40,509 - H281DRAFT_03013 0.45 +0.9
40,528 + H281DRAFT_03013 0.47 +0.2
40,711 + H281DRAFT_03013 0.66 -1.4
40,712 - H281DRAFT_03013 0.66 +0.2
40,820 - H281DRAFT_03013 0.77 +0.7
40,852 + H281DRAFT_03013 0.81 -1.4
40,853 - H281DRAFT_03013 0.81 +0.8
40,995 + -0.3
41,045 - -0.4
41,225 + -0.1
41,326 + +0.3
41,346 + +0.7
41,347 - -0.7
41,374 + +0.8
41,378 + +0.1
41,504 - +0.1
41,504 - -1.7
41,728 + H281DRAFT_03014 0.24 +0.3
41,729 - H281DRAFT_03014 0.25 +0.5

Or see this region's nucleotide sequence