Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02882 and H281DRAFT_02883 are separated by 37 nucleotides H281DRAFT_02883 and H281DRAFT_02884 are separated by 432 nucleotides
H281DRAFT_02882: H281DRAFT_02882 - alpha,alpha-trehalase, at 482,209 to 484,092
_02882
H281DRAFT_02883: H281DRAFT_02883 - Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family, at 484,130 to 485,026
_02883
H281DRAFT_02884: H281DRAFT_02884 - peptide-methionine (S)-S-oxide reductase, at 485,459 to 486,202
_02884
Position (kb) 484
485
486 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 483.164 kb on - strand, within H281DRAFT_02882 at 483.526 kb on + strand, within H281DRAFT_02882 at 483.536 kb on + strand, within H281DRAFT_02882 at 483.670 kb on - strand, within H281DRAFT_02882 at 483.759 kb on + strand at 483.818 kb on - strand, within H281DRAFT_02882 at 483.851 kb on - strand, within H281DRAFT_02882 at 484.238 kb on - strand, within H281DRAFT_02883 at 484.265 kb on + strand, within H281DRAFT_02883 at 484.265 kb on + strand at 484.265 kb on + strand, within H281DRAFT_02883 at 484.266 kb on - strand, within H281DRAFT_02883 at 484.266 kb on - strand, within H281DRAFT_02883 at 484.314 kb on + strand, within H281DRAFT_02883 at 484.372 kb on + strand, within H281DRAFT_02883 at 484.372 kb on + strand, within H281DRAFT_02883 at 484.373 kb on - strand, within H281DRAFT_02883 at 484.374 kb on + strand, within H281DRAFT_02883 at 484.374 kb on + strand, within H281DRAFT_02883 at 484.374 kb on + strand, within H281DRAFT_02883 at 484.374 kb on + strand, within H281DRAFT_02883 at 484.375 kb on - strand, within H281DRAFT_02883 at 484.375 kb on - strand, within H281DRAFT_02883 at 484.447 kb on + strand, within H281DRAFT_02883 at 484.448 kb on - strand, within H281DRAFT_02883 at 484.449 kb on + strand, within H281DRAFT_02883 at 484.449 kb on + strand, within H281DRAFT_02883 at 484.449 kb on + strand, within H281DRAFT_02883 at 484.449 kb on + strand, within H281DRAFT_02883 at 484.542 kb on + strand, within H281DRAFT_02883 at 484.542 kb on + strand, within H281DRAFT_02883 at 484.542 kb on + strand, within H281DRAFT_02883 at 484.543 kb on - strand, within H281DRAFT_02883 at 484.635 kb on + strand, within H281DRAFT_02883 at 484.636 kb on - strand, within H281DRAFT_02883 at 484.723 kb on + strand, within H281DRAFT_02883 at 484.723 kb on + strand, within H281DRAFT_02883 at 484.724 kb on - strand, within H281DRAFT_02883 at 484.724 kb on - strand at 484.725 kb on + strand, within H281DRAFT_02883 at 484.798 kb on + strand, within H281DRAFT_02883 at 484.798 kb on + strand, within H281DRAFT_02883 at 484.799 kb on - strand, within H281DRAFT_02883 at 484.862 kb on - strand, within H281DRAFT_02883 at 484.872 kb on + strand, within H281DRAFT_02883 at 484.873 kb on - strand, within H281DRAFT_02883 at 485.221 kb on + strand at 485.267 kb on - strand at 485.267 kb on - strand at 485.277 kb on - strand at 485.385 kb on - strand at 485.385 kb on - strand at 485.417 kb on + strand at 485.430 kb on + strand at 485.431 kb on - strand at 485.431 kb on - strand at 485.460 kb on + strand at 485.512 kb on + strand at 485.512 kb on + strand at 485.512 kb on + strand at 485.513 kb on - strand at 485.544 kb on + strand, within H281DRAFT_02884 at 485.544 kb on + strand, within H281DRAFT_02884 at 485.545 kb on - strand, within H281DRAFT_02884 at 485.545 kb on - strand, within H281DRAFT_02884 at 485.545 kb on - strand, within H281DRAFT_02884 at 485.546 kb on + strand, within H281DRAFT_02884 at 485.547 kb on - strand, within H281DRAFT_02884 at 485.557 kb on - strand, within H281DRAFT_02884 at 485.595 kb on + strand, within H281DRAFT_02884 at 485.596 kb on - strand, within H281DRAFT_02884 at 485.685 kb on + strand, within H281DRAFT_02884 at 485.740 kb on - strand, within H281DRAFT_02884 at 485.802 kb on + strand, within H281DRAFT_02884 at 485.802 kb on + strand, within H281DRAFT_02884 at 485.803 kb on - strand, within H281DRAFT_02884 at 485.823 kb on + strand, within H281DRAFT_02884 at 485.898 kb on + strand, within H281DRAFT_02884 at 485.898 kb on + strand, within H281DRAFT_02884 at 485.899 kb on - strand, within H281DRAFT_02884 at 485.899 kb on - strand, within H281DRAFT_02884 at 485.949 kb on - strand, within H281DRAFT_02884
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 483,164 - H281DRAFT_02882 0.51 +0.5 483,526 + H281DRAFT_02882 0.70 +0.7 483,536 + H281DRAFT_02882 0.70 +0.5 483,670 - H281DRAFT_02882 0.78 -0.4 483,759 + +3.7 483,818 - H281DRAFT_02882 0.85 -3.2 483,851 - H281DRAFT_02882 0.87 -0.1 484,238 - H281DRAFT_02883 0.12 +0.1 484,265 + H281DRAFT_02883 0.15 +0.6 484,265 + +0.7 484,265 + H281DRAFT_02883 0.15 -0.6 484,266 - H281DRAFT_02883 0.15 -1.7 484,266 - H281DRAFT_02883 0.15 +0.7 484,314 + H281DRAFT_02883 0.21 -1.0 484,372 + H281DRAFT_02883 0.27 +0.1 484,372 + H281DRAFT_02883 0.27 -0.6 484,373 - H281DRAFT_02883 0.27 +0.1 484,374 + H281DRAFT_02883 0.27 -0.7 484,374 + H281DRAFT_02883 0.27 -0.8 484,374 + H281DRAFT_02883 0.27 +1.0 484,374 + H281DRAFT_02883 0.27 -0.1 484,375 - H281DRAFT_02883 0.27 -0.3 484,375 - H281DRAFT_02883 0.27 +0.8 484,447 + H281DRAFT_02883 0.35 +0.8 484,448 - H281DRAFT_02883 0.35 -0.0 484,449 + H281DRAFT_02883 0.36 +0.3 484,449 + H281DRAFT_02883 0.36 -0.7 484,449 + H281DRAFT_02883 0.36 -0.3 484,449 + H281DRAFT_02883 0.36 +0.7 484,542 + H281DRAFT_02883 0.46 -0.1 484,542 + H281DRAFT_02883 0.46 -0.1 484,542 + H281DRAFT_02883 0.46 -0.1 484,543 - H281DRAFT_02883 0.46 +0.9 484,635 + H281DRAFT_02883 0.56 +2.0 484,636 - H281DRAFT_02883 0.56 +0.0 484,723 + H281DRAFT_02883 0.66 -0.9 484,723 + H281DRAFT_02883 0.66 -1.2 484,724 - H281DRAFT_02883 0.66 +0.9 484,724 - +1.7 484,725 + H281DRAFT_02883 0.66 +0.4 484,798 + H281DRAFT_02883 0.74 -0.3 484,798 + H281DRAFT_02883 0.74 +0.8 484,799 - H281DRAFT_02883 0.75 +1.0 484,862 - H281DRAFT_02883 0.82 +1.1 484,872 + H281DRAFT_02883 0.83 -0.5 484,873 - H281DRAFT_02883 0.83 +0.8 485,221 + +0.9 485,267 - -0.3 485,267 - -0.2 485,277 - +0.4 485,385 - -0.1 485,385 - +0.7 485,417 + -2.9 485,430 + -1.5 485,431 - +0.1 485,431 - +0.2 485,460 + -0.6 485,512 + +0.5 485,512 + -2.6 485,512 + -0.1 485,513 - +0.0 485,544 + H281DRAFT_02884 0.11 +0.1 485,544 + H281DRAFT_02884 0.11 -0.1 485,545 - H281DRAFT_02884 0.12 +0.8 485,545 - H281DRAFT_02884 0.12 +0.3 485,545 - H281DRAFT_02884 0.12 +1.3 485,546 + H281DRAFT_02884 0.12 -0.0 485,547 - H281DRAFT_02884 0.12 -0.6 485,557 - H281DRAFT_02884 0.13 +1.2 485,595 + H281DRAFT_02884 0.18 -0.7 485,596 - H281DRAFT_02884 0.18 +0.6 485,685 + H281DRAFT_02884 0.30 -0.0 485,740 - H281DRAFT_02884 0.38 +2.0 485,802 + H281DRAFT_02884 0.46 +0.1 485,802 + H281DRAFT_02884 0.46 +0.1 485,803 - H281DRAFT_02884 0.46 -0.9 485,823 + H281DRAFT_02884 0.49 +0.8 485,898 + H281DRAFT_02884 0.59 +0.4 485,898 + H281DRAFT_02884 0.59 -0.1 485,899 - H281DRAFT_02884 0.59 -0.1 485,899 - H281DRAFT_02884 0.59 +0.5 485,949 - H281DRAFT_02884 0.66 -0.9
Or see this region's nucleotide sequence