Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02808 and H281DRAFT_02809 are separated by 136 nucleotides H281DRAFT_02809 and H281DRAFT_02810 are separated by 71 nucleotides H281DRAFT_02810 and H281DRAFT_02811 are separated by 51 nucleotides H281DRAFT_02811 and H281DRAFT_02812 are separated by 123 nucleotides
H281DRAFT_02808: H281DRAFT_02808 - NAD(P)H-nitrite reductase, at 396,818 to 398,428
_02808
H281DRAFT_02809: H281DRAFT_02809 - hypothetical protein, at 398,565 to 398,735
_02809
H281DRAFT_02810: H281DRAFT_02810 - Predicted PurR-regulated permease PerM, at 398,807 to 400,855
_02810
H281DRAFT_02811: H281DRAFT_02811 - Protein of unknown function (DUF2934), at 400,907 to 401,086
_02811
H281DRAFT_02812: H281DRAFT_02812 - glycogen operon protein, at 401,210 to 403,426
_02812
Position (kb) 398
399
400
401 Strain fitness (log2 ratio) -2
-1
0
1
2 at 397.901 kb on - strand, within H281DRAFT_02808 at 397.924 kb on - strand, within H281DRAFT_02808 at 398.156 kb on + strand, within H281DRAFT_02808 at 398.157 kb on - strand, within H281DRAFT_02808 at 398.184 kb on - strand, within H281DRAFT_02808 at 398.283 kb on - strand at 398.444 kb on - strand at 398.544 kb on - strand at 398.895 kb on + strand at 398.895 kb on + strand at 398.895 kb on + strand at 398.896 kb on - strand at 399.015 kb on + strand, within H281DRAFT_02810 at 399.016 kb on - strand, within H281DRAFT_02810 at 399.051 kb on + strand, within H281DRAFT_02810 at 399.051 kb on + strand, within H281DRAFT_02810 at 399.326 kb on - strand, within H281DRAFT_02810 at 399.577 kb on - strand, within H281DRAFT_02810 at 399.577 kb on - strand, within H281DRAFT_02810 at 400.126 kb on - strand, within H281DRAFT_02810 at 400.487 kb on - strand, within H281DRAFT_02810 at 400.504 kb on + strand, within H281DRAFT_02810 at 400.505 kb on - strand, within H281DRAFT_02810 at 400.731 kb on + strand at 400.872 kb on + strand at 400.873 kb on - strand at 401.034 kb on + strand, within H281DRAFT_02811 at 401.034 kb on + strand at 401.037 kb on + strand, within H281DRAFT_02811 at 401.097 kb on - strand at 401.097 kb on - strand at 401.101 kb on + strand at 401.102 kb on - strand at 401.338 kb on - strand at 401.640 kb on + strand, within H281DRAFT_02812 at 401.640 kb on + strand, within H281DRAFT_02812 at 401.663 kb on - strand, within H281DRAFT_02812
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 397,901 - H281DRAFT_02808 0.67 +0.5 397,924 - H281DRAFT_02808 0.69 -0.8 398,156 + H281DRAFT_02808 0.83 +2.3 398,157 - H281DRAFT_02808 0.83 +0.7 398,184 - H281DRAFT_02808 0.85 +0.9 398,283 - +0.0 398,444 - -0.3 398,544 - +0.1 398,895 + -0.0 398,895 + +0.3 398,895 + +0.4 398,896 - +0.5 399,015 + H281DRAFT_02810 0.10 +1.2 399,016 - H281DRAFT_02810 0.10 -1.9 399,051 + H281DRAFT_02810 0.12 +0.0 399,051 + H281DRAFT_02810 0.12 +0.7 399,326 - H281DRAFT_02810 0.25 -0.7 399,577 - H281DRAFT_02810 0.38 +1.6 399,577 - H281DRAFT_02810 0.38 -1.7 400,126 - H281DRAFT_02810 0.64 +1.4 400,487 - H281DRAFT_02810 0.82 +0.7 400,504 + H281DRAFT_02810 0.83 +2.2 400,505 - H281DRAFT_02810 0.83 +1.4 400,731 + +1.2 400,872 + +0.9 400,873 - +0.1 401,034 + H281DRAFT_02811 0.71 -0.4 401,034 + +0.1 401,037 + H281DRAFT_02811 0.72 +0.5 401,097 - +0.5 401,097 - +0.7 401,101 + +0.0 401,102 - +0.4 401,338 - +1.5 401,640 + H281DRAFT_02812 0.19 -2.2 401,640 + H281DRAFT_02812 0.19 -0.5 401,663 - H281DRAFT_02812 0.20 +0.4
Or see this region's nucleotide sequence