Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02447 and H281DRAFT_02448 are separated by 185 nucleotides H281DRAFT_02448 and H281DRAFT_02449 are separated by 328 nucleotides
H281DRAFT_02447: H281DRAFT_02447 - Short-chain dehydrogenase, at 12,057 to 13,073
_02447
H281DRAFT_02448: H281DRAFT_02448 - Predicted periplasmic or secreted lipoprotein, at 13,259 to 13,627
_02448
H281DRAFT_02449: H281DRAFT_02449 - hypothetical protein, at 13,956 to 14,273
_02449
Position (kb) 13
14 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 12.354 kb on + strand, within H281DRAFT_02447 at 12.354 kb on + strand, within H281DRAFT_02447 at 12.528 kb on + strand, within H281DRAFT_02447 at 12.528 kb on + strand, within H281DRAFT_02447 at 12.528 kb on + strand, within H281DRAFT_02447 at 12.529 kb on - strand, within H281DRAFT_02447 at 12.550 kb on + strand, within H281DRAFT_02447 at 12.550 kb on + strand, within H281DRAFT_02447 at 12.560 kb on + strand, within H281DRAFT_02447 at 12.638 kb on + strand, within H281DRAFT_02447 at 12.766 kb on - strand, within H281DRAFT_02447 at 12.822 kb on + strand, within H281DRAFT_02447 at 12.822 kb on + strand, within H281DRAFT_02447 at 12.822 kb on + strand, within H281DRAFT_02447 at 12.850 kb on + strand, within H281DRAFT_02447 at 12.850 kb on + strand at 13.070 kb on - strand at 13.108 kb on + strand at 13.171 kb on + strand at 13.234 kb on + strand at 13.560 kb on + strand, within H281DRAFT_02448 at 13.836 kb on - strand at 13.851 kb on - strand at 13.917 kb on - strand at 13.940 kb on + strand at 13.941 kb on - strand at 14.118 kb on - strand, within H281DRAFT_02449 at 14.163 kb on - strand, within H281DRAFT_02449 at 14.271 kb on + strand at 14.278 kb on + strand at 14.418 kb on + strand at 14.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 12,354 + H281DRAFT_02447 0.29 +0.3 12,354 + H281DRAFT_02447 0.29 -0.6 12,528 + H281DRAFT_02447 0.46 +0.1 12,528 + H281DRAFT_02447 0.46 -0.4 12,528 + H281DRAFT_02447 0.46 -3.5 12,529 - H281DRAFT_02447 0.46 -1.0 12,550 + H281DRAFT_02447 0.48 +0.7 12,550 + H281DRAFT_02447 0.48 -0.3 12,560 + H281DRAFT_02447 0.49 -0.2 12,638 + H281DRAFT_02447 0.57 +0.5 12,766 - H281DRAFT_02447 0.70 -0.3 12,822 + H281DRAFT_02447 0.75 -0.9 12,822 + H281DRAFT_02447 0.75 -0.4 12,822 + H281DRAFT_02447 0.75 +0.2 12,850 + H281DRAFT_02447 0.78 -0.1 12,850 + +0.4 13,070 - -2.2 13,108 + +2.5 13,171 + -0.0 13,234 + -1.8 13,560 + H281DRAFT_02448 0.82 -0.2 13,836 - -0.9 13,851 - -0.8 13,917 - -0.4 13,940 + -3.8 13,941 - +1.2 14,118 - H281DRAFT_02449 0.51 -0.1 14,163 - H281DRAFT_02449 0.65 -1.0 14,271 + +0.3 14,278 + -0.3 14,418 + -1.3 14,478 - +1.1
Or see this region's nucleotide sequence