Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02328 and H281DRAFT_02329 are separated by 272 nucleotides H281DRAFT_02329 and H281DRAFT_02330 are separated by 50 nucleotides
H281DRAFT_02328: H281DRAFT_02328 - hypothetical protein, at 483,942 to 484,280
_02328
H281DRAFT_02329: H281DRAFT_02329 - dihydroxyacid dehydratase, at 484,553 to 486,286
_02329
H281DRAFT_02330: H281DRAFT_02330 - L-arabinose ABC transporter membrane protein, at 486,337 to 487,341
_02330
Position (kb) 484
485
486
487 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 483.569 kb on + strand at 483.647 kb on - strand at 483.650 kb on - strand at 483.650 kb on - strand at 483.681 kb on + strand at 483.738 kb on + strand at 483.738 kb on + strand at 483.747 kb on + strand at 483.747 kb on + strand at 483.748 kb on - strand at 483.786 kb on + strand at 483.787 kb on - strand at 483.787 kb on - strand at 483.787 kb on - strand at 483.787 kb on - strand at 483.787 kb on - strand at 483.864 kb on - strand at 483.896 kb on - strand at 483.896 kb on - strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.900 kb on - strand at 483.900 kb on - strand at 483.903 kb on + strand at 483.903 kb on + strand at 483.903 kb on + strand at 483.904 kb on - strand at 483.904 kb on - strand at 483.904 kb on - strand at 483.904 kb on - strand at 483.941 kb on + strand at 483.941 kb on + strand at 483.942 kb on - strand at 483.942 kb on - strand at 484.057 kb on - strand, within H281DRAFT_02328 at 484.233 kb on - strand, within H281DRAFT_02328 at 484.284 kb on + strand at 484.284 kb on + strand at 484.285 kb on - strand at 484.285 kb on - strand at 484.286 kb on + strand at 484.286 kb on + strand at 484.286 kb on + strand at 484.287 kb on - strand at 484.287 kb on - strand at 484.287 kb on - strand at 484.287 kb on - strand at 484.287 kb on - strand at 484.384 kb on + strand at 484.384 kb on + strand at 484.528 kb on + strand at 484.528 kb on + strand at 484.529 kb on - strand at 484.644 kb on + strand at 484.644 kb on + strand at 484.654 kb on - strand at 484.870 kb on + strand, within H281DRAFT_02329 at 484.870 kb on + strand, within H281DRAFT_02329 at 484.886 kb on - strand, within H281DRAFT_02329 at 485.320 kb on - strand, within H281DRAFT_02329 at 485.801 kb on - strand, within H281DRAFT_02329 at 486.082 kb on - strand, within H281DRAFT_02329 at 486.133 kb on + strand at 486.133 kb on + strand at 486.133 kb on + strand at 486.133 kb on + strand at 486.133 kb on + strand at 486.133 kb on + strand at 486.134 kb on - strand at 486.134 kb on - strand at 486.134 kb on - strand at 486.134 kb on - strand at 486.134 kb on - strand at 486.134 kb on - strand at 486.310 kb on + strand at 486.310 kb on + strand at 486.310 kb on + strand at 486.310 kb on + strand at 486.310 kb on + strand at 486.311 kb on - strand at 486.311 kb on - strand at 486.311 kb on - strand at 486.311 kb on - strand at 486.311 kb on - strand at 486.338 kb on + strand at 486.410 kb on + strand at 486.410 kb on + strand at 486.410 kb on + strand at 486.411 kb on - strand at 486.797 kb on + strand, within H281DRAFT_02330 at 486.941 kb on + strand, within H281DRAFT_02330 at 486.942 kb on - strand, within H281DRAFT_02330 at 487.015 kb on + strand, within H281DRAFT_02330 at 487.015 kb on + strand, within H281DRAFT_02330 at 487.015 kb on + strand, within H281DRAFT_02330 at 487.021 kb on - strand, within H281DRAFT_02330 at 487.231 kb on + strand, within H281DRAFT_02330 at 487.232 kb on - strand, within H281DRAFT_02330 at 487.232 kb on - strand, within H281DRAFT_02330 at 487.232 kb on - strand, within H281DRAFT_02330 at 487.232 kb on - strand, within H281DRAFT_02330
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 483,569 + +1.2 483,647 - +0.2 483,650 - -0.3 483,650 - -1.1 483,681 + +0.4 483,738 + +0.6 483,738 + -0.1 483,747 + -0.3 483,747 + +0.2 483,748 - -0.3 483,786 + -1.3 483,787 - +0.8 483,787 - +0.9 483,787 - +0.2 483,787 - +0.0 483,787 - +0.6 483,864 - +0.6 483,896 - -1.0 483,896 - -0.6 483,899 + +0.3 483,899 + -1.0 483,899 + +0.3 483,899 + -1.4 483,899 + -0.1 483,899 + -0.7 483,899 + -0.9 483,899 + -1.1 483,900 - +1.0 483,900 - -0.7 483,903 + -1.9 483,903 + -0.0 483,903 + -1.0 483,904 - +0.3 483,904 - +0.0 483,904 - +0.3 483,904 - +0.5 483,941 + +0.3 483,941 + -2.0 483,942 - -0.5 483,942 - +0.6 484,057 - H281DRAFT_02328 0.34 +2.7 484,233 - H281DRAFT_02328 0.86 -1.8 484,284 + -0.8 484,284 + +0.1 484,285 - +0.4 484,285 - +2.7 484,286 + -0.7 484,286 + -0.6 484,286 + +0.5 484,287 - -1.9 484,287 - -0.0 484,287 - -0.0 484,287 - -0.0 484,287 - -1.0 484,384 + -0.6 484,384 + -0.1 484,528 + -1.0 484,528 + +0.7 484,529 - -1.5 484,644 + -1.5 484,644 + +1.3 484,654 - -0.1 484,870 + H281DRAFT_02329 0.18 -0.2 484,870 + H281DRAFT_02329 0.18 -0.6 484,886 - H281DRAFT_02329 0.19 -0.6 485,320 - H281DRAFT_02329 0.44 +0.3 485,801 - H281DRAFT_02329 0.72 -0.3 486,082 - H281DRAFT_02329 0.88 +1.1 486,133 + +0.3 486,133 + +1.2 486,133 + -0.7 486,133 + +0.5 486,133 + -0.4 486,133 + +0.9 486,134 - -0.4 486,134 - +0.1 486,134 - +1.3 486,134 - +0.5 486,134 - +0.3 486,134 - +0.3 486,310 + +0.5 486,310 + -0.4 486,310 + -0.8 486,310 + -0.6 486,310 + +0.6 486,311 - -3.2 486,311 - +0.2 486,311 - +0.7 486,311 - -0.1 486,311 - +0.6 486,338 + -1.1 486,410 + -2.0 486,410 + -1.0 486,410 + +1.1 486,411 - +0.2 486,797 + H281DRAFT_02330 0.46 +0.4 486,941 + H281DRAFT_02330 0.60 +2.1 486,942 - H281DRAFT_02330 0.60 -0.4 487,015 + H281DRAFT_02330 0.67 -2.1 487,015 + H281DRAFT_02330 0.67 +0.2 487,015 + H281DRAFT_02330 0.67 -0.1 487,021 - H281DRAFT_02330 0.68 -3.9 487,231 + H281DRAFT_02330 0.89 -0.7 487,232 - H281DRAFT_02330 0.89 -0.6 487,232 - H281DRAFT_02330 0.89 -0.3 487,232 - H281DRAFT_02330 0.89 -0.4 487,232 - H281DRAFT_02330 0.89 -0.5
Or see this region's nucleotide sequence