Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02187 and H281DRAFT_02188 are separated by 53 nucleotides H281DRAFT_02188 and H281DRAFT_02189 are separated by 3 nucleotides H281DRAFT_02189 and H281DRAFT_02190 are separated by 51 nucleotides
H281DRAFT_02187: H281DRAFT_02187 - predicted sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis /predicted sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis, at 329,977 to 330,999
_02187
H281DRAFT_02188: H281DRAFT_02188 - hypothetical protein, at 331,053 to 331,793
_02188
H281DRAFT_02189: H281DRAFT_02189 - hypothetical protein, at 331,797 to 331,991
_02189
H281DRAFT_02190: H281DRAFT_02190 - Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist, at 332,043 to 333,068
_02190
Position (kb) 331
332 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 330.841 kb on + strand, within H281DRAFT_02187 at 330.842 kb on - strand, within H281DRAFT_02187 at 330.842 kb on - strand, within H281DRAFT_02187 at 330.990 kb on + strand at 330.998 kb on - strand at 330.998 kb on - strand at 331.054 kb on + strand at 331.054 kb on + strand at 331.055 kb on - strand at 331.055 kb on - strand at 331.055 kb on - strand at 331.646 kb on + strand, within H281DRAFT_02188 at 331.646 kb on + strand, within H281DRAFT_02188 at 331.647 kb on - strand, within H281DRAFT_02188 at 331.647 kb on - strand, within H281DRAFT_02188 at 331.769 kb on + strand at 331.770 kb on - strand at 331.817 kb on + strand, within H281DRAFT_02189 at 332.116 kb on + strand at 332.117 kb on - strand at 332.266 kb on + strand at 332.570 kb on - strand, within H281DRAFT_02190 at 332.608 kb on + strand, within H281DRAFT_02190 at 332.609 kb on - strand, within H281DRAFT_02190 at 332.609 kb on - strand, within H281DRAFT_02190 at 332.669 kb on + strand, within H281DRAFT_02190 at 332.669 kb on + strand, within H281DRAFT_02190 at 332.669 kb on + strand, within H281DRAFT_02190 at 332.669 kb on + strand, within H281DRAFT_02190 at 332.670 kb on - strand, within H281DRAFT_02190 at 332.670 kb on - strand, within H281DRAFT_02190 at 332.741 kb on + strand, within H281DRAFT_02190 at 332.741 kb on + strand, within H281DRAFT_02190 at 332.741 kb on + strand, within H281DRAFT_02190 at 332.742 kb on - strand, within H281DRAFT_02190 at 332.742 kb on - strand, within H281DRAFT_02190 at 332.742 kb on - strand, within H281DRAFT_02190 at 332.761 kb on + strand, within H281DRAFT_02190 at 332.762 kb on - strand, within H281DRAFT_02190 at 332.860 kb on + strand, within H281DRAFT_02190 at 332.860 kb on + strand, within H281DRAFT_02190 at 332.861 kb on - strand, within H281DRAFT_02190 at 332.905 kb on + strand, within H281DRAFT_02190 at 332.905 kb on + strand, within H281DRAFT_02190 at 332.920 kb on + strand, within H281DRAFT_02190 at 332.920 kb on + strand, within H281DRAFT_02190 at 332.921 kb on - strand, within H281DRAFT_02190 at 332.939 kb on + strand, within H281DRAFT_02190 at 332.939 kb on + strand, within H281DRAFT_02190 at 332.940 kb on - strand, within H281DRAFT_02190 at 332.940 kb on - strand, within H281DRAFT_02190 at 332.940 kb on - strand, within H281DRAFT_02190 at 332.940 kb on - strand, within H281DRAFT_02190 at 332.951 kb on + strand, within H281DRAFT_02190 at 332.955 kb on + strand, within H281DRAFT_02190 at 332.956 kb on - strand, within H281DRAFT_02190
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 330,841 + H281DRAFT_02187 0.84 +0.2 330,842 - H281DRAFT_02187 0.85 -1.0 330,842 - H281DRAFT_02187 0.85 -0.9 330,990 + -0.1 330,998 - -2.2 330,998 - +0.8 331,054 + +0.9 331,054 + -0.8 331,055 - -0.7 331,055 - -0.6 331,055 - -1.2 331,646 + H281DRAFT_02188 0.80 -0.5 331,646 + H281DRAFT_02188 0.80 +1.1 331,647 - H281DRAFT_02188 0.80 -0.6 331,647 - H281DRAFT_02188 0.80 +0.3 331,769 + -0.3 331,770 - +0.2 331,817 + H281DRAFT_02189 0.10 -3.9 332,116 + +1.0 332,117 - -0.5 332,266 + +2.1 332,570 - H281DRAFT_02190 0.51 +0.2 332,608 + H281DRAFT_02190 0.55 -0.5 332,609 - H281DRAFT_02190 0.55 +0.5 332,609 - H281DRAFT_02190 0.55 -0.5 332,669 + H281DRAFT_02190 0.61 +1.1 332,669 + H281DRAFT_02190 0.61 -0.1 332,669 + H281DRAFT_02190 0.61 -0.9 332,669 + H281DRAFT_02190 0.61 -3.1 332,670 - H281DRAFT_02190 0.61 -0.9 332,670 - H281DRAFT_02190 0.61 -0.4 332,741 + H281DRAFT_02190 0.68 +0.2 332,741 + H281DRAFT_02190 0.68 -0.7 332,741 + H281DRAFT_02190 0.68 -1.2 332,742 - H281DRAFT_02190 0.68 +0.7 332,742 - H281DRAFT_02190 0.68 -0.0 332,742 - H281DRAFT_02190 0.68 +0.1 332,761 + H281DRAFT_02190 0.70 +0.1 332,762 - H281DRAFT_02190 0.70 -3.5 332,860 + H281DRAFT_02190 0.80 -0.4 332,860 + H281DRAFT_02190 0.80 -2.4 332,861 - H281DRAFT_02190 0.80 +0.1 332,905 + H281DRAFT_02190 0.84 -0.6 332,905 + H281DRAFT_02190 0.84 +1.5 332,920 + H281DRAFT_02190 0.85 -0.2 332,920 + H281DRAFT_02190 0.85 -3.2 332,921 - H281DRAFT_02190 0.86 -1.3 332,939 + H281DRAFT_02190 0.87 +0.5 332,939 + H281DRAFT_02190 0.87 -0.0 332,940 - H281DRAFT_02190 0.87 -0.2 332,940 - H281DRAFT_02190 0.87 -1.4 332,940 - H281DRAFT_02190 0.87 +0.7 332,940 - H281DRAFT_02190 0.87 -0.6 332,951 + H281DRAFT_02190 0.88 -0.1 332,955 + H281DRAFT_02190 0.89 +1.1 332,956 - H281DRAFT_02190 0.89 -0.3
Or see this region's nucleotide sequence