Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02052 and H281DRAFT_02053 overlap by 29 nucleotides H281DRAFT_02053 and H281DRAFT_02054 are separated by 12 nucleotides H281DRAFT_02054 and H281DRAFT_02055 are separated by 334 nucleotides H281DRAFT_02055 and H281DRAFT_02056 are separated by 8 nucleotides
H281DRAFT_02052: H281DRAFT_02052 - hypothetical protein, at 175,682 to 175,951
_02052
H281DRAFT_02053: H281DRAFT_02053 - D-alanine transaminase, at 175,923 to 176,873
_02053
H281DRAFT_02054: H281DRAFT_02054 - penicillin-binding protein 6. Serine peptidase. MEROPS family S11, at 176,886 to 178,115
_02054
H281DRAFT_02055: H281DRAFT_02055 - hypothetical protein, at 178,450 to 179,094
_02055
H281DRAFT_02056: H281DRAFT_02056 - (2Fe-2S) ferredoxin, at 179,103 to 179,426
_02056
Position (kb) 176
177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 175.920 kb on + strand, within H281DRAFT_02052 at 175.928 kb on + strand at 175.929 kb on - strand at 175.996 kb on + strand at 175.997 kb on - strand at 175.997 kb on - strand at 175.997 kb on - strand at 176.005 kb on + strand at 176.006 kb on - strand at 176.241 kb on + strand, within H281DRAFT_02053 at 176.241 kb on + strand, within H281DRAFT_02053 at 176.242 kb on - strand, within H281DRAFT_02053 at 176.242 kb on - strand, within H281DRAFT_02053 at 176.242 kb on - strand, within H281DRAFT_02053 at 176.242 kb on - strand, within H281DRAFT_02053 at 176.339 kb on - strand, within H281DRAFT_02053 at 176.339 kb on - strand, within H281DRAFT_02053 at 176.548 kb on + strand, within H281DRAFT_02053 at 176.549 kb on - strand, within H281DRAFT_02053 at 176.734 kb on + strand, within H281DRAFT_02053 at 176.735 kb on - strand, within H281DRAFT_02053 at 176.736 kb on + strand, within H281DRAFT_02053 at 176.737 kb on - strand, within H281DRAFT_02053 at 176.752 kb on + strand, within H281DRAFT_02053 at 176.753 kb on - strand, within H281DRAFT_02053 at 176.834 kb on - strand at 177.115 kb on + strand at 177.115 kb on + strand, within H281DRAFT_02054 at 177.116 kb on - strand, within H281DRAFT_02054 at 177.116 kb on - strand, within H281DRAFT_02054 at 177.199 kb on + strand, within H281DRAFT_02054 at 177.200 kb on - strand, within H281DRAFT_02054 at 177.200 kb on - strand, within H281DRAFT_02054 at 177.227 kb on - strand, within H281DRAFT_02054 at 177.232 kb on + strand, within H281DRAFT_02054 at 177.232 kb on + strand, within H281DRAFT_02054 at 177.232 kb on + strand, within H281DRAFT_02054 at 177.233 kb on - strand, within H281DRAFT_02054 at 177.233 kb on - strand, within H281DRAFT_02054 at 177.233 kb on - strand, within H281DRAFT_02054 at 177.454 kb on + strand, within H281DRAFT_02054 at 177.454 kb on + strand, within H281DRAFT_02054 at 177.455 kb on - strand, within H281DRAFT_02054 at 177.455 kb on - strand, within H281DRAFT_02054 at 177.484 kb on + strand, within H281DRAFT_02054 at 177.484 kb on + strand, within H281DRAFT_02054 at 177.484 kb on + strand, within H281DRAFT_02054 at 177.485 kb on - strand, within H281DRAFT_02054 at 177.485 kb on - strand, within H281DRAFT_02054 at 177.487 kb on + strand, within H281DRAFT_02054 at 177.547 kb on + strand, within H281DRAFT_02054 at 177.547 kb on + strand, within H281DRAFT_02054 at 177.548 kb on - strand, within H281DRAFT_02054 at 177.548 kb on - strand, within H281DRAFT_02054 at 177.548 kb on - strand, within H281DRAFT_02054 at 177.712 kb on + strand, within H281DRAFT_02054 at 177.856 kb on + strand, within H281DRAFT_02054 at 177.856 kb on + strand, within H281DRAFT_02054 at 178.051 kb on - strand at 178.116 kb on - strand at 178.116 kb on - strand at 178.134 kb on + strand at 178.134 kb on + strand at 178.134 kb on + strand at 178.135 kb on - strand at 178.135 kb on - strand at 178.135 kb on - strand at 178.136 kb on + strand at 178.201 kb on - strand at 178.265 kb on + strand at 178.298 kb on - strand at 178.353 kb on + strand at 178.353 kb on + strand at 178.355 kb on + strand at 178.355 kb on + strand at 178.355 kb on + strand at 178.355 kb on + strand at 178.355 kb on + strand at 178.356 kb on - strand at 178.356 kb on - strand at 178.364 kb on + strand at 178.415 kb on - strand at 178.420 kb on + strand at 178.485 kb on + strand at 178.883 kb on + strand, within H281DRAFT_02055 at 178.883 kb on + strand, within H281DRAFT_02055 at 178.884 kb on - strand, within H281DRAFT_02055 at 178.884 kb on - strand, within H281DRAFT_02055 at 178.884 kb on - strand, within H281DRAFT_02055 at 178.892 kb on + strand, within H281DRAFT_02055 at 179.072 kb on + strand at 179.072 kb on - strand at 179.082 kb on + strand at 179.082 kb on + strand at 179.082 kb on + strand at 179.083 kb on - strand at 179.083 kb on - strand at 179.104 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 175,920 + H281DRAFT_02052 0.88 +1.5 175,928 + -0.1 175,929 - -0.7 175,996 + +0.1 175,997 - +0.5 175,997 - +0.7 175,997 - -0.9 176,005 + -0.8 176,006 - +1.2 176,241 + H281DRAFT_02053 0.33 -0.0 176,241 + H281DRAFT_02053 0.33 -2.3 176,242 - H281DRAFT_02053 0.34 +1.0 176,242 - H281DRAFT_02053 0.34 -0.3 176,242 - H281DRAFT_02053 0.34 -0.5 176,242 - H281DRAFT_02053 0.34 +0.6 176,339 - H281DRAFT_02053 0.44 -2.3 176,339 - H281DRAFT_02053 0.44 -0.2 176,548 + H281DRAFT_02053 0.66 -2.0 176,549 - H281DRAFT_02053 0.66 -0.5 176,734 + H281DRAFT_02053 0.85 +0.9 176,735 - H281DRAFT_02053 0.85 -0.2 176,736 + H281DRAFT_02053 0.85 +0.2 176,737 - H281DRAFT_02053 0.86 -0.4 176,752 + H281DRAFT_02053 0.87 -0.8 176,753 - H281DRAFT_02053 0.87 +0.5 176,834 - +0.7 177,115 + +0.1 177,115 + H281DRAFT_02054 0.19 -3.5 177,116 - H281DRAFT_02054 0.19 +0.5 177,116 - H281DRAFT_02054 0.19 -0.4 177,199 + H281DRAFT_02054 0.25 +0.2 177,200 - H281DRAFT_02054 0.26 +0.8 177,200 - H281DRAFT_02054 0.26 -1.7 177,227 - H281DRAFT_02054 0.28 -1.3 177,232 + H281DRAFT_02054 0.28 -1.4 177,232 + H281DRAFT_02054 0.28 -1.2 177,232 + H281DRAFT_02054 0.28 -0.8 177,233 - H281DRAFT_02054 0.28 -1.5 177,233 - H281DRAFT_02054 0.28 +0.1 177,233 - H281DRAFT_02054 0.28 -0.9 177,454 + H281DRAFT_02054 0.46 -2.3 177,454 + H281DRAFT_02054 0.46 -0.0 177,455 - H281DRAFT_02054 0.46 -1.0 177,455 - H281DRAFT_02054 0.46 +0.1 177,484 + H281DRAFT_02054 0.49 -1.3 177,484 + H281DRAFT_02054 0.49 -0.7 177,484 + H281DRAFT_02054 0.49 +0.3 177,485 - H281DRAFT_02054 0.49 -1.5 177,485 - H281DRAFT_02054 0.49 +0.5 177,487 + H281DRAFT_02054 0.49 -1.5 177,547 + H281DRAFT_02054 0.54 -0.9 177,547 + H281DRAFT_02054 0.54 -0.6 177,548 - H281DRAFT_02054 0.54 -3.6 177,548 - H281DRAFT_02054 0.54 -2.9 177,548 - H281DRAFT_02054 0.54 +3.4 177,712 + H281DRAFT_02054 0.67 -1.5 177,856 + H281DRAFT_02054 0.79 -1.3 177,856 + H281DRAFT_02054 0.79 -0.1 178,051 - -1.8 178,116 - -1.9 178,116 - -0.3 178,134 + -1.6 178,134 + -3.5 178,134 + -0.3 178,135 - -0.2 178,135 - +0.3 178,135 - -0.6 178,136 + -1.5 178,201 - -2.5 178,265 + -0.4 178,298 - -1.1 178,353 + -1.1 178,353 + -1.1 178,355 + -0.0 178,355 + +0.2 178,355 + -0.5 178,355 + -0.4 178,355 + -0.4 178,356 - +0.3 178,356 - +0.8 178,364 + -0.9 178,415 - +0.1 178,420 + +0.2 178,485 + +2.1 178,883 + H281DRAFT_02055 0.67 +0.8 178,883 + H281DRAFT_02055 0.67 +0.4 178,884 - H281DRAFT_02055 0.67 -1.0 178,884 - H281DRAFT_02055 0.67 +0.1 178,884 - H281DRAFT_02055 0.67 +0.1 178,892 + H281DRAFT_02055 0.69 -2.1 179,072 + -0.2 179,072 - -1.3 179,082 + -0.1 179,082 + -0.4 179,082 + -0.0 179,083 - -0.9 179,083 - +0.7 179,104 + +0.3
Or see this region's nucleotide sequence