Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01928 and H281DRAFT_01929 are separated by 326 nucleotides H281DRAFT_01929 and H281DRAFT_01930 are separated by 139 nucleotides H281DRAFT_01930 and H281DRAFT_01931 are separated by 103 nucleotides
H281DRAFT_01928: H281DRAFT_01928 - sigma 54 modulation protein /SSU ribosomal protein S30P, at 45,819 to 46,175
_01928
H281DRAFT_01929: H281DRAFT_01929 - PTS IIA-like nitrogen-regulatory protein PtsN, at 46,502 to 47,017
_01929
H281DRAFT_01930: H281DRAFT_01930 - Hpr(Ser) kinase/phosphatase, at 47,157 to 48,125
_01930
H281DRAFT_01931: H281DRAFT_01931 - UPF0042 nucleotide-binding protein, at 48,229 to 49,122
_01931
Position (kb) 47
48
49 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 46.183 kb on + strand at 46.183 kb on + strand at 46.184 kb on - strand at 46.193 kb on - strand at 46.354 kb on + strand at 46.354 kb on + strand at 46.355 kb on - strand at 46.355 kb on - strand at 46.382 kb on + strand at 46.400 kb on + strand at 46.400 kb on + strand at 46.400 kb on + strand at 46.400 kb on + strand at 46.400 kb on + strand at 46.401 kb on - strand at 46.401 kb on - strand at 46.401 kb on - strand at 46.401 kb on - strand at 46.401 kb on - strand at 46.402 kb on + strand at 46.402 kb on + strand at 46.402 kb on + strand at 46.402 kb on + strand at 46.427 kb on + strand at 46.455 kb on + strand at 46.455 kb on + strand at 46.455 kb on + strand at 47.077 kb on + strand at 47.077 kb on + strand at 47.077 kb on + strand at 48.134 kb on + strand at 48.134 kb on + strand at 48.135 kb on - strand at 48.144 kb on - strand at 48.199 kb on + strand at 48.199 kb on + strand at 48.199 kb on + strand at 48.200 kb on - strand at 48.200 kb on - strand at 48.200 kb on - strand at 48.200 kb on - strand at 48.254 kb on + strand at 48.305 kb on - strand at 48.305 kb on - strand at 48.305 kb on - strand at 48.307 kb on + strand at 48.308 kb on - strand at 48.356 kb on - strand, within H281DRAFT_01931 at 48.797 kb on + strand, within H281DRAFT_01931 at 48.798 kb on - strand, within H281DRAFT_01931 at 48.798 kb on - strand, within H281DRAFT_01931 at 48.798 kb on - strand, within H281DRAFT_01931 at 48.817 kb on + strand, within H281DRAFT_01931 at 48.990 kb on + strand, within H281DRAFT_01931 at 48.991 kb on - strand, within H281DRAFT_01931 at 48.991 kb on - strand, within H281DRAFT_01931 at 49.050 kb on + strand at 49.050 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 46,183 + +2.9 46,183 + +0.8 46,184 - +0.2 46,193 - +0.1 46,354 + +0.6 46,354 + -1.8 46,355 - -1.8 46,355 - -1.0 46,382 + -1.1 46,400 + -0.3 46,400 + -0.1 46,400 + -0.5 46,400 + +0.4 46,400 + +1.5 46,401 - +1.0 46,401 - -2.6 46,401 - -0.4 46,401 - +0.7 46,401 - +0.3 46,402 + +0.6 46,402 + -1.6 46,402 + -0.1 46,402 + +0.1 46,427 + +0.3 46,455 + +0.0 46,455 + -1.4 46,455 + +0.2 47,077 + -0.8 47,077 + -0.5 47,077 + +0.6 48,134 + -1.6 48,134 + -0.3 48,135 - -0.1 48,144 - +2.5 48,199 + +0.3 48,199 + -0.8 48,199 + +0.1 48,200 - +0.2 48,200 - -1.3 48,200 - +2.1 48,200 - +1.0 48,254 + -0.5 48,305 - -1.6 48,305 - +0.4 48,305 - -0.4 48,307 + -2.6 48,308 - -1.6 48,356 - H281DRAFT_01931 0.14 -0.8 48,797 + H281DRAFT_01931 0.64 -1.8 48,798 - H281DRAFT_01931 0.64 +0.3 48,798 - H281DRAFT_01931 0.64 -0.8 48,798 - H281DRAFT_01931 0.64 -1.8 48,817 + H281DRAFT_01931 0.66 +1.2 48,990 + H281DRAFT_01931 0.85 -0.1 48,991 - H281DRAFT_01931 0.85 -1.3 48,991 - H281DRAFT_01931 0.85 +0.9 49,050 + -0.2 49,050 + -0.3
Or see this region's nucleotide sequence