Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01728 and H281DRAFT_01729 are separated by 127 nucleotides H281DRAFT_01729 and H281DRAFT_01730 are separated by 13 nucleotides
H281DRAFT_01728: H281DRAFT_01728 - transcriptional regulator, LysR family, at 617,018 to 617,947
_01728
H281DRAFT_01729: H281DRAFT_01729 - 3-oxoacyl-[acyl-carrier protein] reductase, at 618,075 to 618,848
_01729
H281DRAFT_01730: H281DRAFT_01730 - Predicted oxidoreductase, at 618,862 to 619,845
_01730
Position (kb) 618
619 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 617.100 kb on + strand at 617.100 kb on + strand at 617.115 kb on + strand, within H281DRAFT_01728 at 617.116 kb on - strand, within H281DRAFT_01728 at 617.118 kb on + strand, within H281DRAFT_01728 at 617.118 kb on + strand, within H281DRAFT_01728 at 617.118 kb on + strand, within H281DRAFT_01728 at 617.119 kb on - strand, within H281DRAFT_01728 at 617.214 kb on + strand, within H281DRAFT_01728 at 617.219 kb on + strand, within H281DRAFT_01728 at 617.331 kb on + strand, within H281DRAFT_01728 at 617.418 kb on + strand, within H281DRAFT_01728 at 617.564 kb on - strand, within H281DRAFT_01728 at 617.652 kb on - strand, within H281DRAFT_01728 at 617.912 kb on + strand at 617.993 kb on + strand at 617.997 kb on + strand at 617.998 kb on - strand at 617.998 kb on - strand at 618.038 kb on - strand at 618.094 kb on + strand at 618.094 kb on + strand at 618.117 kb on - strand at 618.334 kb on + strand, within H281DRAFT_01729 at 618.392 kb on + strand, within H281DRAFT_01729 at 618.394 kb on + strand, within H281DRAFT_01729 at 618.658 kb on + strand, within H281DRAFT_01729 at 618.658 kb on + strand, within H281DRAFT_01729 at 618.659 kb on - strand, within H281DRAFT_01729 at 618.799 kb on - strand at 618.999 kb on + strand, within H281DRAFT_01730 at 619.246 kb on + strand, within H281DRAFT_01730 at 619.246 kb on + strand, within H281DRAFT_01730 at 619.309 kb on + strand, within H281DRAFT_01730 at 619.387 kb on + strand, within H281DRAFT_01730 at 619.387 kb on + strand, within H281DRAFT_01730
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 617,100 + +0.4 617,100 + +0.5 617,115 + H281DRAFT_01728 0.10 -0.1 617,116 - H281DRAFT_01728 0.11 +0.6 617,118 + H281DRAFT_01728 0.11 -0.5 617,118 + H281DRAFT_01728 0.11 -1.4 617,118 + H281DRAFT_01728 0.11 +0.1 617,119 - H281DRAFT_01728 0.11 +0.5 617,214 + H281DRAFT_01728 0.21 -1.0 617,219 + H281DRAFT_01728 0.22 +0.2 617,331 + H281DRAFT_01728 0.34 -0.3 617,418 + H281DRAFT_01728 0.43 +0.5 617,564 - H281DRAFT_01728 0.59 +0.2 617,652 - H281DRAFT_01728 0.68 +0.2 617,912 + -0.2 617,993 + -0.3 617,997 + -2.8 617,998 - -0.8 617,998 - -1.5 618,038 - -1.8 618,094 + +0.3 618,094 + +0.7 618,117 - +0.5 618,334 + H281DRAFT_01729 0.33 -1.8 618,392 + H281DRAFT_01729 0.41 -1.7 618,394 + H281DRAFT_01729 0.41 +0.2 618,658 + H281DRAFT_01729 0.75 +0.2 618,658 + H281DRAFT_01729 0.75 -1.7 618,659 - H281DRAFT_01729 0.75 +0.3 618,799 - +0.6 618,999 + H281DRAFT_01730 0.14 -0.8 619,246 + H281DRAFT_01730 0.39 -0.5 619,246 + H281DRAFT_01730 0.39 +2.7 619,309 + H281DRAFT_01730 0.45 +0.4 619,387 + H281DRAFT_01730 0.53 -0.6 619,387 + H281DRAFT_01730 0.53 -1.5
Or see this region's nucleotide sequence