Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01691 and H281DRAFT_01692 are separated by 623 nucleotides H281DRAFT_01692 and H281DRAFT_01693 are separated by 347 nucleotides
H281DRAFT_01691: H281DRAFT_01691 - hypothetical protein, at 573,734 to 575,374
_01691
H281DRAFT_01692: H281DRAFT_01692 - methyl-accepting chemotaxis protein-1, serine sensor receptor, at 575,998 to 577,551
_01692
H281DRAFT_01693: H281DRAFT_01693 - Threonine dehydrogenase, at 577,899 to 579,044
_01693
Position (kb) 575
576
577
578 Strain fitness (log2 ratio) -2
-1
0
1
2 at 575.014 kb on - strand, within H281DRAFT_01691 at 575.032 kb on + strand, within H281DRAFT_01691 at 575.033 kb on - strand, within H281DRAFT_01691 at 575.034 kb on + strand, within H281DRAFT_01691 at 575.052 kb on - strand, within H281DRAFT_01691 at 575.052 kb on - strand, within H281DRAFT_01691 at 575.062 kb on + strand, within H281DRAFT_01691 at 575.063 kb on - strand, within H281DRAFT_01691 at 575.579 kb on + strand at 575.582 kb on + strand at 575.832 kb on - strand at 575.890 kb on - strand at 576.180 kb on + strand, within H281DRAFT_01692 at 576.180 kb on + strand, within H281DRAFT_01692 at 576.331 kb on + strand, within H281DRAFT_01692 at 576.657 kb on + strand, within H281DRAFT_01692 at 576.790 kb on + strand, within H281DRAFT_01692 at 576.853 kb on + strand, within H281DRAFT_01692 at 576.859 kb on + strand, within H281DRAFT_01692 at 576.899 kb on - strand, within H281DRAFT_01692 at 577.197 kb on + strand, within H281DRAFT_01692 at 577.198 kb on - strand, within H281DRAFT_01692 at 577.198 kb on - strand, within H281DRAFT_01692 at 577.198 kb on - strand, within H281DRAFT_01692 at 577.198 kb on - strand, within H281DRAFT_01692 at 577.426 kb on + strand at 577.426 kb on + strand at 577.426 kb on + strand at 577.480 kb on + strand at 577.596 kb on + strand at 577.605 kb on - strand at 577.605 kb on - strand at 577.653 kb on + strand at 577.734 kb on + strand at 578.056 kb on + strand, within H281DRAFT_01693 at 578.056 kb on + strand, within H281DRAFT_01693 at 578.087 kb on + strand, within H281DRAFT_01693 at 578.088 kb on - strand, within H281DRAFT_01693 at 578.088 kb on - strand, within H281DRAFT_01693 at 578.494 kb on + strand, within H281DRAFT_01693
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 575,014 - H281DRAFT_01691 0.78 +0.9 575,032 + H281DRAFT_01691 0.79 +0.6 575,033 - H281DRAFT_01691 0.79 +1.9 575,034 + H281DRAFT_01691 0.79 +0.8 575,052 - H281DRAFT_01691 0.80 -0.3 575,052 - H281DRAFT_01691 0.80 +0.5 575,062 + H281DRAFT_01691 0.81 +2.4 575,063 - H281DRAFT_01691 0.81 +0.2 575,579 + -0.5 575,582 + +0.0 575,832 - -0.7 575,890 - -0.7 576,180 + H281DRAFT_01692 0.12 -0.4 576,180 + H281DRAFT_01692 0.12 -1.3 576,331 + H281DRAFT_01692 0.21 +1.5 576,657 + H281DRAFT_01692 0.42 -1.4 576,790 + H281DRAFT_01692 0.51 +0.5 576,853 + H281DRAFT_01692 0.55 -0.6 576,859 + H281DRAFT_01692 0.55 -0.4 576,899 - H281DRAFT_01692 0.58 -1.1 577,197 + H281DRAFT_01692 0.77 -1.4 577,198 - H281DRAFT_01692 0.77 +1.4 577,198 - H281DRAFT_01692 0.77 +2.2 577,198 - H281DRAFT_01692 0.77 +0.3 577,198 - H281DRAFT_01692 0.77 -2.4 577,426 + +0.1 577,426 + +1.4 577,426 + -1.2 577,480 + -0.3 577,596 + -0.5 577,605 - -0.7 577,605 - -0.1 577,653 + +0.9 577,734 + +0.1 578,056 + H281DRAFT_01693 0.14 -0.3 578,056 + H281DRAFT_01693 0.14 +0.3 578,087 + H281DRAFT_01693 0.16 -0.9 578,088 - H281DRAFT_01693 0.16 -0.8 578,088 - H281DRAFT_01693 0.16 -0.1 578,494 + H281DRAFT_01693 0.52 -0.0
Or see this region's nucleotide sequence