Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01666 and H281DRAFT_01667 are separated by 98 nucleotides H281DRAFT_01667 and H281DRAFT_01668 are separated by 150 nucleotides
H281DRAFT_01666: H281DRAFT_01666 - 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39), at 545,309 to 546,364
_01666
H281DRAFT_01667: H281DRAFT_01667 - DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain, at 546,463 to 547,692
_01667
H281DRAFT_01668: H281DRAFT_01668 - gamma-aminobutyrate:proton symporter, AAT family, at 547,843 to 549,222
_01668
Position (kb) 546
547
548 Strain fitness (log2 ratio) -2
-1
0
1 at 545.874 kb on + strand, within H281DRAFT_01666 at 545.875 kb on - strand, within H281DRAFT_01666 at 546.362 kb on + strand at 546.363 kb on - strand at 546.376 kb on + strand at 546.527 kb on - strand at 546.716 kb on + strand, within H281DRAFT_01667 at 546.773 kb on + strand, within H281DRAFT_01667 at 546.810 kb on - strand, within H281DRAFT_01667 at 546.887 kb on + strand, within H281DRAFT_01667 at 546.888 kb on - strand, within H281DRAFT_01667 at 546.888 kb on - strand, within H281DRAFT_01667 at 546.909 kb on - strand, within H281DRAFT_01667 at 547.562 kb on + strand, within H281DRAFT_01667 at 547.562 kb on + strand, within H281DRAFT_01667 at 547.562 kb on + strand, within H281DRAFT_01667 at 548.143 kb on - strand, within H281DRAFT_01668 at 548.645 kb on - strand, within H281DRAFT_01668
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 545,874 + H281DRAFT_01666 0.54 -0.0 545,875 - H281DRAFT_01666 0.54 -2.3 546,362 + +0.1 546,363 - -0.4 546,376 + -0.4 546,527 - +0.7 546,716 + H281DRAFT_01667 0.21 -1.1 546,773 + H281DRAFT_01667 0.25 +0.7 546,810 - H281DRAFT_01667 0.28 -1.0 546,887 + H281DRAFT_01667 0.34 -1.3 546,888 - H281DRAFT_01667 0.35 -1.8 546,888 - H281DRAFT_01667 0.35 -1.2 546,909 - H281DRAFT_01667 0.36 +0.4 547,562 + H281DRAFT_01667 0.89 +0.1 547,562 + H281DRAFT_01667 0.89 +0.2 547,562 + H281DRAFT_01667 0.89 +1.4 548,143 - H281DRAFT_01668 0.22 +0.7 548,645 - H281DRAFT_01668 0.58 +0.3
Or see this region's nucleotide sequence