Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01403 and H281DRAFT_01404 are separated by 111 nucleotides H281DRAFT_01404 and H281DRAFT_01405 are separated by 38 nucleotides H281DRAFT_01405 and H281DRAFT_01406 are separated by 129 nucleotides
H281DRAFT_01403: H281DRAFT_01403 - hypothetical protein, at 257,799 to 258,785
_01403
H281DRAFT_01404: H281DRAFT_01404 - hypothetical protein, at 258,897 to 258,995
_01404
H281DRAFT_01405: H281DRAFT_01405 - hypothetical protein, at 259,034 to 259,732
_01405
H281DRAFT_01406: H281DRAFT_01406 - hypothetical protein, at 259,862 to 260,245
_01406
Position (kb) 258
259 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 258.054 kb on - strand, within H281DRAFT_01403 at 258.209 kb on - strand, within H281DRAFT_01403 at 258.411 kb on + strand, within H281DRAFT_01403 at 258.790 kb on - strand at 258.876 kb on - strand at 258.956 kb on - strand, within H281DRAFT_01404 at 259.087 kb on - strand at 259.087 kb on - strand at 259.158 kb on - strand, within H281DRAFT_01405 at 259.158 kb on - strand at 259.158 kb on - strand, within H281DRAFT_01405 at 259.158 kb on - strand at 259.162 kb on - strand, within H281DRAFT_01405 at 259.446 kb on - strand, within H281DRAFT_01405 at 259.528 kb on + strand, within H281DRAFT_01405 at 259.529 kb on - strand, within H281DRAFT_01405 at 259.599 kb on - strand, within H281DRAFT_01405 at 259.672 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 258,054 - H281DRAFT_01403 0.26 -0.7 258,209 - H281DRAFT_01403 0.42 -0.9 258,411 + H281DRAFT_01403 0.62 +0.8 258,790 - +2.2 258,876 - -0.2 258,956 - H281DRAFT_01404 0.60 +3.1 259,087 - +0.1 259,087 - +1.4 259,158 - H281DRAFT_01405 0.18 +1.9 259,158 - -1.2 259,158 - H281DRAFT_01405 0.18 +0.3 259,158 - +1.2 259,162 - H281DRAFT_01405 0.18 -0.6 259,446 - H281DRAFT_01405 0.59 -2.1 259,528 + H281DRAFT_01405 0.71 -0.2 259,529 - H281DRAFT_01405 0.71 -0.5 259,599 - H281DRAFT_01405 0.81 -0.6 259,672 + +1.8
Or see this region's nucleotide sequence