Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01333 and H281DRAFT_01334 are separated by 83 nucleotides H281DRAFT_01334 and H281DRAFT_01335 overlap by 31 nucleotides
H281DRAFT_01333: H281DRAFT_01333 - pyrroloquinoline quinone biosynthesis protein E, at 173,257 to 174,459
_01333
H281DRAFT_01334: H281DRAFT_01334 - two component transcriptional regulator, LuxR family, at 174,543 to 175,205
_01334
H281DRAFT_01335: H281DRAFT_01335 - Signal transduction histidine kinase, at 175,175 to 176,197
_01335
Position (kb) 174
175
176 Strain fitness (log2 ratio) -1
0
1 at 173.773 kb on + strand, within H281DRAFT_01333 at 173.830 kb on + strand, within H281DRAFT_01333 at 173.854 kb on + strand, within H281DRAFT_01333 at 173.858 kb on - strand, within H281DRAFT_01333 at 173.858 kb on - strand, within H281DRAFT_01333 at 174.047 kb on + strand, within H281DRAFT_01333 at 174.048 kb on - strand, within H281DRAFT_01333 at 174.253 kb on + strand, within H281DRAFT_01333 at 174.254 kb on - strand, within H281DRAFT_01333 at 174.452 kb on - strand at 174.458 kb on - strand at 175.553 kb on + strand, within H281DRAFT_01335 at 175.554 kb on - strand, within H281DRAFT_01335 at 175.554 kb on - strand, within H281DRAFT_01335 at 175.797 kb on + strand, within H281DRAFT_01335
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 173,773 + H281DRAFT_01333 0.43 +0.3 173,830 + H281DRAFT_01333 0.48 -0.2 173,854 + H281DRAFT_01333 0.50 -0.6 173,858 - H281DRAFT_01333 0.50 +0.6 173,858 - H281DRAFT_01333 0.50 -1.7 174,047 + H281DRAFT_01333 0.66 +0.0 174,048 - H281DRAFT_01333 0.66 +1.4 174,253 + H281DRAFT_01333 0.83 +0.3 174,254 - H281DRAFT_01333 0.83 -0.7 174,452 - -0.4 174,458 - +0.1 175,553 + H281DRAFT_01335 0.37 +0.5 175,554 - H281DRAFT_01335 0.37 -0.2 175,554 - H281DRAFT_01335 0.37 -0.9 175,797 + H281DRAFT_01335 0.61 +0.9
Or see this region's nucleotide sequence