Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01314 and H281DRAFT_01315 are separated by 25 nucleotides H281DRAFT_01315 and H281DRAFT_01316 are separated by 114 nucleotides H281DRAFT_01316 and H281DRAFT_01317 are separated by 109 nucleotides
H281DRAFT_01314: H281DRAFT_01314 - D-fructose 1,6-bisphosphatase (EC 3.1.3.11), at 154,108 to 155,223
_01314
H281DRAFT_01315: H281DRAFT_01315 - probable Rubsico expression protein CbbX, at 155,249 to 156,337
_01315
H281DRAFT_01316: H281DRAFT_01316 - ribulose 1,5-bisphosphate carboxylase small subunit, at 156,452 to 156,880
_01316
H281DRAFT_01317: H281DRAFT_01317 - ribulose 1,5-bisphosphate carboxylase large subunit, at 156,990 to 158,489
_01317
Position (kb) 155
156
157 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 154.352 kb on + strand, within H281DRAFT_01314 at 154.353 kb on - strand, within H281DRAFT_01314 at 155.111 kb on - strand, within H281DRAFT_01314 at 155.920 kb on - strand, within H281DRAFT_01315 at 155.920 kb on - strand, within H281DRAFT_01315 at 155.920 kb on - strand, within H281DRAFT_01315 at 155.920 kb on - strand, within H281DRAFT_01315 at 155.973 kb on + strand, within H281DRAFT_01315 at 156.053 kb on - strand, within H281DRAFT_01315 at 156.433 kb on + strand at 156.886 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 154,352 + H281DRAFT_01314 0.22 -4.0 154,353 - H281DRAFT_01314 0.22 +0.1 155,111 - H281DRAFT_01314 0.90 +3.4 155,920 - H281DRAFT_01315 0.62 +0.6 155,920 - H281DRAFT_01315 0.62 +0.3 155,920 - H281DRAFT_01315 0.62 +0.5 155,920 - H281DRAFT_01315 0.62 +0.4 155,973 + H281DRAFT_01315 0.66 -0.7 156,053 - H281DRAFT_01315 0.74 -0.3 156,433 + -0.2 156,886 - -2.8
Or see this region's nucleotide sequence