Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01303 and H281DRAFT_01304 are separated by 103 nucleotides H281DRAFT_01304 and H281DRAFT_01305 are separated by 91 nucleotides H281DRAFT_01305 and H281DRAFT_01306 are separated by 69 nucleotides
H281DRAFT_01303: H281DRAFT_01303 - triphosphoribosyl-dephospho-CoA synthase, at 142,030 to 142,968
_01303
H281DRAFT_01304: H281DRAFT_01304 - formaldehyde activating enzyme, at 143,072 to 143,581
_01304
H281DRAFT_01305: H281DRAFT_01305 - hypothetical protein, at 143,673 to 144,080
_01305
H281DRAFT_01306: H281DRAFT_01306 - dihydroneopterin aldolase, at 144,150 to 144,686
_01306
Position (kb) 143
144 Strain fitness (log2 ratio) -1
0
1
2 at 142.804 kb on - strand, within H281DRAFT_01303 at 142.804 kb on - strand at 143.468 kb on + strand, within H281DRAFT_01304 at 143.475 kb on - strand, within H281DRAFT_01304 at 143.681 kb on - strand at 143.811 kb on + strand, within H281DRAFT_01305 at 143.904 kb on + strand, within H281DRAFT_01305 at 143.940 kb on + strand, within H281DRAFT_01305 at 144.015 kb on - strand, within H281DRAFT_01305 at 144.355 kb on - strand, within H281DRAFT_01306 at 144.522 kb on + strand, within H281DRAFT_01306 at 144.524 kb on + strand, within H281DRAFT_01306
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 142,804 - H281DRAFT_01303 0.82 +0.7 142,804 - -0.2 143,468 + H281DRAFT_01304 0.78 -0.6 143,475 - H281DRAFT_01304 0.79 -0.4 143,681 - +0.2 143,811 + H281DRAFT_01305 0.34 +1.8 143,904 + H281DRAFT_01305 0.57 +0.5 143,940 + H281DRAFT_01305 0.65 -0.6 144,015 - H281DRAFT_01305 0.84 -0.3 144,355 - H281DRAFT_01306 0.38 -0.9 144,522 + H281DRAFT_01306 0.69 +0.4 144,524 + H281DRAFT_01306 0.70 +0.1
Or see this region's nucleotide sequence