Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01238 and H281DRAFT_01239 are separated by 325 nucleotides H281DRAFT_01239 and H281DRAFT_01240 are separated by 130 nucleotides H281DRAFT_01240 and H281DRAFT_01241 are separated by 14 nucleotides
H281DRAFT_01238: H281DRAFT_01238 - FMN reductase, at 75,132 to 75,791
_01238
H281DRAFT_01239: H281DRAFT_01239 - hypothetical protein, at 76,117 to 76,332
_01239
H281DRAFT_01240: H281DRAFT_01240 - hypothetical protein, at 76,463 to 77,380
_01240
H281DRAFT_01241: H281DRAFT_01241 - mandelamide amidase, at 77,395 to 78,849
_01241
Position (kb) 76
77
78 Strain fitness (log2 ratio) -2
-1
0
1
2 at 75.468 kb on + strand, within H281DRAFT_01238 at 75.469 kb on - strand, within H281DRAFT_01238 at 75.508 kb on - strand, within H281DRAFT_01238 at 75.847 kb on + strand at 75.865 kb on + strand at 75.866 kb on - strand at 75.866 kb on - strand at 75.873 kb on + strand at 75.876 kb on + strand at 75.876 kb on + strand at 75.876 kb on + strand at 75.894 kb on - strand at 76.068 kb on + strand at 76.069 kb on - strand at 76.090 kb on + strand at 76.144 kb on + strand, within H281DRAFT_01239 at 76.237 kb on + strand, within H281DRAFT_01239 at 76.427 kb on - strand at 76.479 kb on + strand at 76.479 kb on + strand at 76.480 kb on - strand at 76.480 kb on - strand at 76.480 kb on - strand at 76.602 kb on - strand, within H281DRAFT_01240 at 76.725 kb on - strand, within H281DRAFT_01240 at 76.901 kb on + strand, within H281DRAFT_01240 at 76.902 kb on - strand, within H281DRAFT_01240 at 77.062 kb on + strand, within H281DRAFT_01240 at 77.062 kb on + strand, within H281DRAFT_01240 at 77.805 kb on + strand, within H281DRAFT_01241 at 77.805 kb on + strand, within H281DRAFT_01241 at 78.092 kb on + strand, within H281DRAFT_01241 at 78.093 kb on - strand, within H281DRAFT_01241
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 75,468 + H281DRAFT_01238 0.51 +1.0 75,469 - H281DRAFT_01238 0.51 +0.8 75,508 - H281DRAFT_01238 0.57 +1.2 75,847 + -1.4 75,865 + -1.8 75,866 - +0.2 75,866 - +1.4 75,873 + -0.5 75,876 + +0.6 75,876 + +0.3 75,876 + -0.2 75,894 - +1.6 76,068 + +2.6 76,069 - -0.8 76,090 + -0.4 76,144 + H281DRAFT_01239 0.12 +0.8 76,237 + H281DRAFT_01239 0.56 -1.4 76,427 - -0.7 76,479 + +0.5 76,479 + -0.8 76,480 - -0.4 76,480 - -1.0 76,480 - -0.0 76,602 - H281DRAFT_01240 0.15 +0.7 76,725 - H281DRAFT_01240 0.29 -0.5 76,901 + H281DRAFT_01240 0.48 +1.2 76,902 - H281DRAFT_01240 0.48 +0.3 77,062 + H281DRAFT_01240 0.65 +0.4 77,062 + H281DRAFT_01240 0.65 -1.9 77,805 + H281DRAFT_01241 0.28 +0.2 77,805 + H281DRAFT_01241 0.28 +1.6 78,092 + H281DRAFT_01241 0.48 +0.4 78,093 - H281DRAFT_01241 0.48 -0.8
Or see this region's nucleotide sequence