Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01183 and H281DRAFT_01184 are separated by 28 nucleotides H281DRAFT_01184 and H281DRAFT_01185 are separated by 131 nucleotides H281DRAFT_01185 and H281DRAFT_01186 are separated by 143 nucleotides
H281DRAFT_01183: H281DRAFT_01183 - Sugar lactone lactonase YvrE, at 19,461 to 20,342
_01183
H281DRAFT_01184: H281DRAFT_01184 - 3-oxoacyl-[acyl-carrier protein] reductase, at 20,371 to 21,123
_01184
H281DRAFT_01185: H281DRAFT_01185 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 21,255 to 22,616
_01185
H281DRAFT_01186: H281DRAFT_01186 - DNA-binding transcriptional regulator, LysR family, at 22,760 to 23,671
_01186
Position (kb) 21
22
23 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 20.284 kb on + strand at 20.660 kb on - strand at 20.886 kb on - strand, within H281DRAFT_01184 at 21.203 kb on + strand at 21.221 kb on + strand at 21.239 kb on - strand at 21.913 kb on + strand, within H281DRAFT_01185 at 21.920 kb on + strand, within H281DRAFT_01185 at 21.920 kb on + strand, within H281DRAFT_01185 at 22.072 kb on - strand, within H281DRAFT_01185 at 22.463 kb on + strand, within H281DRAFT_01185 at 22.704 kb on - strand at 22.898 kb on - strand, within H281DRAFT_01186 at 22.954 kb on + strand, within H281DRAFT_01186 at 23.315 kb on + strand, within H281DRAFT_01186 at 23.555 kb on + strand, within H281DRAFT_01186 at 23.555 kb on + strand, within H281DRAFT_01186 at 23.556 kb on - strand, within H281DRAFT_01186 at 23.556 kb on - strand, within H281DRAFT_01186 at 23.556 kb on - strand, within H281DRAFT_01186
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 20,284 + -0.6 20,660 - +0.8 20,886 - H281DRAFT_01184 0.68 -1.1 21,203 + -0.6 21,221 + +2.8 21,239 - +0.2 21,913 + H281DRAFT_01185 0.48 -0.0 21,920 + H281DRAFT_01185 0.49 +0.8 21,920 + H281DRAFT_01185 0.49 +0.5 22,072 - H281DRAFT_01185 0.60 -0.3 22,463 + H281DRAFT_01185 0.89 -1.3 22,704 - -1.0 22,898 - H281DRAFT_01186 0.15 -0.0 22,954 + H281DRAFT_01186 0.21 -0.3 23,315 + H281DRAFT_01186 0.61 -0.5 23,555 + H281DRAFT_01186 0.87 +0.3 23,555 + H281DRAFT_01186 0.87 -3.6 23,556 - H281DRAFT_01186 0.87 +0.9 23,556 - H281DRAFT_01186 0.87 +0.4 23,556 - H281DRAFT_01186 0.87 +0.1
Or see this region's nucleotide sequence