Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01182 and H281DRAFT_01183 are separated by 11 nucleotides H281DRAFT_01183 and H281DRAFT_01184 are separated by 28 nucleotides H281DRAFT_01184 and H281DRAFT_01185 are separated by 131 nucleotides
H281DRAFT_01182: H281DRAFT_01182 - SnoaL-like domain-containing protein, at 18,877 to 19,449
_01182
H281DRAFT_01183: H281DRAFT_01183 - Sugar lactone lactonase YvrE, at 19,461 to 20,342
_01183
H281DRAFT_01184: H281DRAFT_01184 - 3-oxoacyl-[acyl-carrier protein] reductase, at 20,371 to 21,123
_01184
H281DRAFT_01185: H281DRAFT_01185 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 21,255 to 22,616
_01185
Position (kb) 20
21
22 Strain fitness (log2 ratio) -1
0
1
2
3 at 19.935 kb on + strand at 19.941 kb on + strand, within H281DRAFT_01183 at 20.165 kb on + strand at 20.166 kb on - strand, within H281DRAFT_01183 at 20.284 kb on + strand at 20.660 kb on - strand at 20.886 kb on - strand, within H281DRAFT_01184 at 21.203 kb on + strand at 21.221 kb on + strand at 21.239 kb on - strand at 21.913 kb on + strand, within H281DRAFT_01185 at 21.920 kb on + strand, within H281DRAFT_01185 at 21.920 kb on + strand, within H281DRAFT_01185 at 22.072 kb on - strand, within H281DRAFT_01185
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 19,935 + +3.6 19,941 + H281DRAFT_01183 0.54 -1.0 20,165 + +0.8 20,166 - H281DRAFT_01183 0.80 +0.2 20,284 + -0.6 20,660 - +0.8 20,886 - H281DRAFT_01184 0.68 -1.1 21,203 + -0.6 21,221 + +2.8 21,239 - +0.2 21,913 + H281DRAFT_01185 0.48 -0.0 21,920 + H281DRAFT_01185 0.49 +0.8 21,920 + H281DRAFT_01185 0.49 +0.5 22,072 - H281DRAFT_01185 0.60 -0.3
Or see this region's nucleotide sequence